BtaINT0103949 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008442 | NSF
Description
N-ethylmaleimide-sensitive factor [Source:HGNC Symbol;Acc:HGNC:8016]
Coordinates
chr19:46205261-46207970:-
Coord C1 exon
chr19:46207871-46207970
Coord A exon
chr19:46205301-46207870
Coord C2 exon
chr19:46205261-46205300
Length
2570 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCCTCTCTTTTGTTTTACAGCGA
3' ss Score
11.61
Exon sequences
Seq C1 exon
GCACGTGATTGTGAGGACCTCCCCCAACCACAGGTACACATTTACACTGAGGACACACCCATCTGTGGTTCCAGGGAGCATTGCATTCAGCTTACCTCAG
Seq A exon
GTAACTAGGAAGTGAATTTATTCTCCTCTAATCTTGAAAGTTGTAGAAGAATCAATTCATTTAAAGCAAGCTGTATCACCCTGTAGTGGTATTGATTCATATCGATGAAAACGATCTAGGTGTTATATAAGGAATTTAAAGATACGTTCTTAATTGCCAATTTTTACTGTATCTGTATTGTATTGCCTTGATTTTTTCCCCCTAATTAAAAAAAATAATTCTGCAGTGATATCAGTTAGCTATCAGTGTCAAGTTATTTTAATGTTAGCTCTCAGGGTAATAGAGAATATATAAAAATAGCACTTACATCTAAAATTGACATCTAATAATAGCGTTTTTAAATACAATGATGTTAGACTAAAGAACATGATATGAGTAGGGCTTCCCTGATGGCTCAGTGATAAAGAATCTGCCTTCAGTGCAGGAGACACAGGAGCATGTGGGTTCGATCCCTGAGTCAGGAAGATCCCCTGGAGAAGGAAATGGGAACCCATGCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGACTGGCTACATTCCAAACAGTCAAGTCGAACATGCCTGAGTGACTAAGTACAGTTGTTATATCAAATTACAGCCTAACTTGCTGGGCTTCCATAATAAGTGGAAGGATTATGATTAAATTTATAGCTGTTGGTAGATTCTGTGGAGGAGAAATTGCCTAACACTCTTGCAGGCACATAATATGTAATATAGGAGCATCGGAAGTACTAGTCTGTGTCCTTTCCTCCCTTGTCATCTTACTCAGGCTGCTGATCCTTAGTCCTAAACAGTGCAAATGCAACCCATACCTCCTGTACTATGCCAGTTGATTGCTGCCCTCCCACCTCTGGAGGTTTAGGGAAAGAGATCAAAAGGAGAATTAACTCCTTAAGGAACTGTTAAAGATCTCTTGAATTCCTCACATGTTATGGGAAATCTTCATTTGCTATTCCCTTTCCCCCTTTTGAATGCCTCTGCAGTATCAGGACTGCTTTTTGCATTTGTTTATATAGATCAAAGGTTTGGAATGTTCTAGAGCTTACCAGCTTTCTCAGAGCTAAATTTGGGACTCAGCTGGCCAGAAATGGGATTTCTAACCATTTTTCCTTGTCTGTCTGCTTTAAAAAAATTTTCCCCAACATTTACTACAAACCAAGTACTACTCTTAAGTGCTTTTGCATGTGTTCCTTCATTGAATTCTGTCAACAACCCCAGATGATGGATAGTATTCTTATCATCCTTGAGGCTATCTCTGGGTGTAGAGCCTAAATGTGGCTGCTTTGTGACCCCAAATCTGGGCTCAACCAGTGTGCCTCTGCGTTTCCGGTTGGCCGAAAGTGGAATGGAGTATGACAGAAGAGAGAAGTGAAGGGTGGAGAGGAAGTGAGAAAGCTGGGAGGGAGAGCACTTGTTGCATGGATTCAAAACGCAGCATCTTCTTAACCCCTCACCACCACAAAGTTCACGAAGTTCAGATGAGTAGACAAACTTGTTTTTCAGCCAAAGATTATTTTTCTCACTGTTCTTTGAAGTGTTGTCAGGAAGTACTCATTTTGAATCTATATCAAGCCAGTCCTGAATTCCTGCCTGAACACAATCTGTCCTGCCTCTGTATATTCTTGCCATTGTAACCAGTCGGTACCTAGGGAGAAGCTAAAAGCCTTGTCACAAATGCCTGACGCTTCTTTGGCTAGTACACAAAGAGTAGTCATGACCATCTAATGATTTGAATCCCTGCTTGGTTTCATTATTGTCTATCTGATGAGTTCTGATTTATTTTTCATGAATTGAACATCTTTCTTTTTGTGCTACTGTATCAAACAGTATAACTGTCCACAGTACATTTAGAATCTGAAATGTCTGATACTCCGAAGGCCTTCAGGAGCGTTAAAATATTATGCAAAGGAGCATCCTACTCAGTGGTGCCGGCTTTACTGTAAAAAGGCAAACTTTCTACATTTTGAGGACAGATATTCAGGTATAAATAAACTCTAGCATATGTTTGCTAGGGCGGCTGTAACAAAGTACCACAAACTAGGTGGCTTAAAATAACAGAAATTTATTCTCCCACAGTTCTGGAGGCAGAAGTCTGAAATCAAGGTGTCAGCAGGGCCGTGTTCTCTCTGAAGGCACTAGGAAAAAATCTGTTCCATGCTTAGCTTCTGGTGTAGCAGACAGTCTTTGATGTTCATTGACTGGTGGCTGTGTCACTTCAGTCCCTGCCTTCACTGTCCCATGACTTTTTCCCCATTTGACTGTGTCTCTTTTTTCTTATAAGGAAGCCATATTGGCTTAGAGTCTATCTTAATTCATTGTGACCTCATCGTACCTTGATATCATCTGCAGAGACCCTGTTTCCAAATGCTGTCACATTCATTGGAGCTGGGGGCTAAGGCTTTAATGTATCTTTTTTGTGGGACACGGTTCAACACTTAACAGCCATGGTTTAGTCTTGGAATGTGTACATGAAATTCACAGAAATCCAGTTTTCCTCGTTTCTCTAATTTTGATGTGGTATTAAGTGTCTTTTTTCCCCCCCTCTCTTTTGTTTTACAG
Seq C2 exon
CGAAAATGGGCTGGACTTTCTATTGGACAAGAAATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008442:ENSBTAT00000011107:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
NA
C2:
PF0235913=CDC48_N=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]