DreINT0106669 @ danRer10
Intron Retention
Gene
ENSDARG00000007654 | nsfa
Description
N-ethylmaleimide-sensitive factor a [Source:ZFIN;Acc:ZDB-GENE-030616-37]
Coordinates
chr3:34654698-34655532:-
Coord C1 exon
chr3:34655433-34655532
Coord A exon
chr3:34654738-34655432
Coord C2 exon
chr3:34654698-34654737
Length
695 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
CTTCTTAACCCTTCTTAAAGAGG
3' ss Score
3.32
Exon sequences
Seq C1 exon
GCATGTGACTGTGAGGACAACACCCACCCACAAGTTTGTGTTCACAGTGAAGGGTCACCACTCTGTGCTCCCTGGAACCATCGCTTTCAGTTTGCCACAG
Seq A exon
GTGCAGAAGTCATGCCAAGATCTGTTACTTGTGATACAAACACAGCACAAGACTAATTAACATTGAAATAACAAAGAACAGCTAAGCAAACATATTTAAAGAGACAGTTCAGACAAAAATGAAAAATTTGTTCATCTTGGAAAACAAAATTATATTTGTGAAGAATGTTGGCAACCAAATGGTTGACTTTCATTGTGCATTTTTTATTGTTTAATACAAATTTTGAAGGGGCGTCATGGTGGCTCAGTGGTTAGCACTGCAAGAAGGTCTCTGGTTTGAGCCCCAGCTGGGCCAGTTGGTGTTTCTGTGTTGAGTTTGCATGTTCTCCCCATGTTTGTATGGGTTTCCTCTGGGCGCTCCGGTTTCCCCCCACAGTCCAAAGACATGCACTATAGGTGAATTGAATAAGCTTAATTGGCCGTAGTCTATGTGTGTGAATGTGAGTGTTTGGGTGTTTCCCAGTGCGGGGATGCAACTGGAGGGGGATCCGCTGAGTAAAACATATGCTGGATAAGCTGGCAGTTCATTCCGCTGTTGCCACACTTGATAAATAATGGGAATAAGCTGAAAGAAAACAAATGAATGAACAAGTTTTGAATTATATAAGTGATGAACAAATATTCATTATTGTCTGAACATTATATTTTGATGGACCTTTTACATGTTATTCACTCTCTTCTTAACCCTTCTTAAAG
Seq C2 exon
AGGAAATGGGCAGGCCTGTCCATTGGGCAAGAAATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007654:ENSDART00000103043:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
NA
C2:
PF0235913=CDC48_N=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]