GgaINT0143100 @ galGal4
Intron Retention
Gene
ENSGALG00000001055 | NSF
Description
vesicle-fusing ATPase [Source:RefSeq peptide;Acc:NP_001019627]
Coordinates
chr27:1200825-1202846:-
Coord C1 exon
chr27:1202747-1202846
Coord A exon
chr27:1200865-1202746
Coord C2 exon
chr27:1200825-1200864
Length
1882 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
GTTCTGTCTTATTTTTACAGAGA
3' ss Score
8.84
Exon sequences
Seq C1 exon
ACACGTTGTGGTGAAGACTTCTCCCAATCACAAATACATCTTCACACTGAGAACACATCCCTCTGTTGTTCCTGGCAACATCGCCTTCAGCTTACCCCAG
Seq A exon
GTATAAACCCTTTCAATAAAGAAACCATAAGCAACATCTCCTCGTTTGTGAATTTGTGGTGTTCCCTGGTTTCCTTTGTTTTAGAGTGTTTTCTTTGTTGCATTGCAGGAAGGTTCCTTGATTATTATGTTCATCGTTAATATTTCTAGAGGAGATGTGCAATTAAATGCATCAAATAGATGTAACTTTTCACTCTTTCTTAATTAAGTCAAGCTGCCGCATGTTAAATCATGCTTAGAGTAAATAATGGATGCAATTAACTTCTCAGTAGAAAAATGAGTCTTTAACTGACTTACACAATGAGTTGCAACACAAAGAACTGCAACAAGTGGGGTCACTGATTTATTGCTTTCGTATTTGCCTTCTGGTAACTAGTCAAGAAGCAGAGTCTGTGCTGCACACGCAAGGCTTTTTTCCTCAACAGATGACTTGGCATAGTCCCCAAAACTACTTTTTGCTTTTTAATGTGTTGTTCATATTTGTCCGGATGAGTGGGTGAAGAGAGTGTGAAGTTACTGTCTGTGCAGTTGAGACTTAAGCTGCTAAGGCTGAAAACCAGTTATCAATAGAAGATAATTGTATTGCAGGGCTGAAACAGGCATTCACTGTTCAGTGGTCATTTTTGTAGATTGCAGTAATTATTGTAGGTCTGGGGAAGCTCTTCTGATAAGGAATAAGGTAGTATGGTATTTCAGATGAAGGTGGGTTTAGGGTATCTTTTTGCTGGAGAACTGCATTGTCAGGGGAAAGGAAGGATTCTTCCTGGCCATGCAGATGAACAGTGGAAACTGTGAAGAGTGAGATTAAGTGTGGAAACATGGTTTGTTTTCACTTTCTTGGAAATACCGAAGTATACGTAAACTTCCTGTTCTGGGCTTTCATTTCTAAAGCTTGATCCCTGTTATGCCAAGGGAATTCTTTCCTTATCTCTAATTTTAGTTTGGATCCATGAAGATATTGAAGAGGGAATTCAGGGGGAAATTTTCATTTTTGGAAAAGGTCATTGTTCCTTCCAGGATAAAAAGCCAAACATAATTGACCACAAAGCAAAACATTTCAAGTGCAATTTTACCAGAGCCCTGTGTAATGATACTTATATACTTCTGTGATTCACTCCTCTCTAAGGTTGAGATATTTAAGAGATGGTGAGTATTGTCTAGCCTGAACAGTGGGCTGTAAATACACAATAGCCAATCTGTGTCAAAAAAAAACTGTTCACTGGAAAAACACTGCTTTTGCAATTACTAAGCAATAACTTTTGACATTGTAAAGGTCATAGATTTTCACATTTCGTGTTATTGAACTGTTTCTTATTTCCCATGCAGTTCTCTGTTGCACAAAACTTCTTAAAGGAATTTGGAGGAAGCTGATGGGTTTGAAAAATTCCCTTCTTAGTAATTACCTGGACAAGTTTGAATTGCTTCCAGTTTTAATGTAACTTCAAGCACATTGTAACAATTTCCTGCAACTATTGTCCACACGTAAGCTTTTAAAATAATCAGGAAAAACCATTCTTGCCCATTGTACTATTCATAGGGGAGGTAATACTTGACCTTTAGTAGAAAAGGAGCAGAATGGGGGGGGAAAAAAGAAACAACAAAAATCACCAAACATATGCAGTGTGATAACTTTGGTGCCCAAGGCAGTAGGGTGATTGGTAATATGTAGGAAGTTGGACAGAGTCACTTCCCAAGGTCAGAAATTGGGGTTATTGATAGAACTGATGGACTCGCTGTTAATTTTGGGGTCTTCATCCAGTTCTGCCCTCTTTTTCTTAAGGTTCTTATGTTGGGGAGTTAGGGGCTGTTTTTCTAAGTAACTTTTGAGTAGACACATTCTATTGAAGGGCAGACTTTCTTAAGGTTCTGTCTTATTTTTACAG
Seq C2 exon
AGAAAATGGGCTGGACTTTCCATAGGACAAGAGATAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001055:ENSGALT00000001581:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
NA
C2:
PF0235913=CDC48_N=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]