MmuINT0110981 @ mm10
Intron Retention
Gene
ENSMUSG00000034187 | Nsf
Description
N-ethylmaleimide sensitive fusion protein [Source:MGI Symbol;Acc:MGI:104560]
Coordinates
chr11:103926148-103928843:-
Coord C1 exon
chr11:103928744-103928843
Coord A exon
chr11:103926188-103928743
Coord C2 exon
chr11:103926148-103926187
Length
2556 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTGTCCTTTTTATTTTATAGCGA
3' ss Score
10.4
Exon sequences
Seq C1 exon
GCATGTGATGGTGAGGACGTCCCCCAATCACAAGTACATATTTACGCTGAGGACCCATCCGTCAGTGGTTCCAGGATGCATCGCGTTCAGCTTGCCTCAG
Seq A exon
GTAACAAAAATGAGTTCTCCTTAGCAGAAAAGTTGCAGGCGTCAATTCATTTTAAGCAAACGTTGCTCTCTAACTGTATTGATTCATAGCAAAGAGAACCACCTAGATGTTGCATACAGAATTTAAAGATATATTAGTTTTTGAAAAAAGCATTCATTTTACTTACTTTGTTTACAGGGAGGGCACTCATGCAACAGTGGAGGTCAGAGAAAAGTTGGCAAGAGTCATGTGGGTCCTGGGCTCAAGTTCATGTCATTAGGTTTGATGGCAGACACTTTAGCTTTCTGAACCATCTCACTGACCCTAAAGATACATTTTTAATTTGTCAACTATTTACAATGATACTTTTATAGTATCTGTATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGATAATTTCTAAATAGTAAAGGAATTTATTGATGACTTACAGTCGGCAGCCCAATTCCCAACAATGGTTCAGTCGCAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAGGAGCAAGAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAAAAGGTGTAGCCCAGATTAAAGGTGTGTTCCACCACACCTTTAATCCCAGATGAAAGGCATAGCCCAGATTAAAGGTGTGTTCCTTAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTATGGCTCAAGATCTTCAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAATAGCCACTACAGTATCTTTAGTTTTTTTCAAGTTAAAAAAAAAAGTCTGAGGTATTATCAGTTGGCTGTTCGAAAAAGTGTGATGTGCTTTTAACACCGAGTCCCAGGGTAACACATCATTTATATTATTTATAAAATTGACATCTAATAATAGAGGTTTCATAATGCTGTGCTGTTCGACCTAGCCTGTGGAGAGTTGTTGTCTAGACTACAATCTGGCTTTCTGGGCATCTCTGGAGCTTGGAAGGCATAACTGTGAGTGGATTGTGAGGAGTCCACAGTCATGGTGCCCAGTGCTCACCCCTAGTACCAAAGGTGCCACCTGACTCCCAGGACCCACATTCCTAGCAATGTAAATTTTATATTTGTTTCTATAGATTAAAAATTTGGGCTATACGAGACCCTGGCCCAGTCTCAAAATATAAATGAACTGATTAATTAGTTTAGTTTAATAGTTAATATAGTTTAATAAAACGTTTGGACTGTCTAGCTTTGAACAGAGCTCCAGGCTAGCTAGGGCCACAAATTGAGACCCTGTCTCAAAAAACAAAACAGAATCCTCCCAAGATCCACTCCAAGCCTCGTGGAATGTGATAACTGATTCGATTCTCAGGACAAACACTGGATACCGGTACTATCATCCAAAGACTGTCTTTGCGGTTAAAGTGCGGAATCGCAGTGTAACCAGTTGCTTTGTGTCCCAAAGCCTAGACTGACTAGCGCGTTGCTAAGTGTCATCTTGGCCAGAGAGAAGGTGGGTTTTGTAGAGGATCTTTTGGGGGTGTGGTCAGAGGAAGAAGCAGGAAACTGGAAGGGGAGCACTCGTTGCTTTCGGTGTAGCATCTTTTACCCACCCGCCCTAGGGTCCACTGTGGTCACATGAGCAGGCAAGCAGTGGGTTTTCAGCCAGAACTTATGTCCCCAGAATTCTGTGGAGCACTATCAGTAATAACTGATTTTAAATCTGATAAGGTAGCCCTGAATTCTTACCTAAGTGCATTCTATTCCTGTCTCCTGCCAGTATAGTCAGGACAGGTGACTGGCTCTAAGCACCCGAAAATCCTTTGGCCGGATTGCACAGAGTAATCCTGACCACTTCATGATTTCAGTGTGGATCATCTGACCAGTTTTAGTTTAATTTCATGAATTTAATTTGTTTTTGTGGTTACAGCAAATCACACACAACTAACTGCAGCTGTGCACTAATACAGACCCATCTGCCATAGGAAGATGGGGAGGTGTATTGTGTTGTACAAAACTTTGCACACCACGGACAGCTTTGCTCTAGAATGGGTGAAAATTGAAAAATATTCTCTCATGGTTCTGAAAGCTGGCAGCTCGCAAAGGCAGCATACAGCTAGCTGCTCCCGAGGGCTCCAGGAGGGCTGGCCGTGCGGAGCCGGTGGGGTGTCGGCAGTCCGTGGCTGGCATCACTTCATTTTTACCTCTGTCATCACATGGCGTTCTCCTTGCATCTCCAGTCACGTTGGCTTAGGGCTTATCCTAATGCAGTCTGCAAAGACCCTGACTATAGATGCAGTTAATCACACACCCAGGAGCTAAACACTGGCGTTTTGGGTGTGGGTGATCACAGTTTCGCACATAACAACATACTGTGTCTTGGTTTTACAGTCTTTCTGAAGTTCATAGCTACCCATCTTTTTTTTTTTCATTTCTCTGATACTGACTTGATTTTAACTGTCCTTTTTATTTTATAG
Seq C2 exon
CGAAAATGGGCTGGACTTTCTATTGGACAGGACATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034187:ENSMUST00000103075:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=PU(58.8=96.8)
A:
NA
C2:
PF0235913=CDC48_N=PD(16.0=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types