RnoINT0103415 @ rn6
Intron Retention
Gene
ENSRNOG00000003905 | Nsf
Description
N-ethylmaleimide sensitive factor, vesicle fusing ATPase [Source:RGD Symbol;Acc:621594]
Coordinates
chr10:91981869-91984585:-
Coord C1 exon
chr10:91984486-91984585
Coord A exon
chr10:91981909-91984485
Coord C2 exon
chr10:91981869-91981908
Length
2577 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TTCTCTCATTTATTTTATAGCGA
3' ss Score
8.79
Exon sequences
Seq C1 exon
GCATGTGATGGTGAGGACGTCCCCCAACCACAAGTACATATTTACGCTGCGGACCCATCCGTCCGTGGTTCCCGGATGCATCGCGTTCAGCTTACCCCAG
Seq A exon
GTGACAAAATGTCTTCTCCGTAGCCGAAAGTCGCAGACTCAGCTCATTTTCAGCAAGCATTGGCCTCTGACTGTATTGATTCATATTGAAGAAAACCACCTAGACGCTGCGTACAGAATTTAAAGACATACTCTCTTCAGAAGAAAGTATTTATTTTACTTGTTTACGGGGAGGGCACTCATGCCACAGTGGAGGTCAGAGAACAGTTGATGGGAGTCAGTCTGTCATTTGGGTCCCCAGGCTCAAGTTTATGTCGTTAGGTTTGATGGCAGATACTTTAACCTTCTGAACCATCTCACTGGCCCTAAAGTACATTTTTAATTTGTTAACTACTTACAGTGATACCTTTATATTATGTTCAGTTTTTTTTTAAAAAAAAAGATTTATTTATTTATTATACAGAAGTACACTGTAGCTATCTTCAGACACACCAGGAGAGGGTGTCAGATCCCATTACACATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTCAGGATCTCTAAGAAGAGCAGTCAGTGCTCTTAATGACTGAGCCATCTCTCCAGCCCCTCTTCAGTTTTTTCGAATGAGAAAAAATAAAAGTCTGAGGTATGTTGACTATTGGAAAGAGTGTGGTGTTCTTTTAACAAAAAATCCCAGGATAACAGAAATTATATAAAACAACACATCATTTATATTATTTATAAAATTGACATCTAATGATAGAGGTTTTATAATGCTGTGCTGTCCGACCTAACCTGTGAAGAGTAGTTGTCTAGACTACGATCTAGATTTTCTGGGCCTCTCTAGAGTCGGGAAGGTATCACTGAGCGGATTGTGAGGAGTCCACCGTCATGGTGCCCAGTGCTTACTCCTACTACCATAGGTGCCACTGGACTCCAATGACCCACATTCCTAGCAATGTAAATTTTATATTTGTTTCTATAGATTAAAAATGTGGGCTATATGAGACCCAGACCCTGTCTCAAAAAATAAAATGAACTGATTAGTTTAGTTTAATAGTTTAGTTAATATAGTTTAAGAAAAAGTTTGGGCTATCTAGCTTTGAACAGAGCTCCAGGCTAGCTATGGCTATAAATTGAGACCCTGTCTCAACAAAACAAAACAAAACAAAACAAAACACGCCAAATACTACCAAGATACACTCCAGCGTCATGGGATGTGGTAACTGATTGACTTCTCAGGACAAACACTGGAGACTGGTACTATCGTCCAAAGATAGTCCTTGCAGGTAAAGTCCAGAACCTCAGTGTGACCTCTTTGTGTCCCAAAGTCTAGATTGACTAGCATGTTGCTAAATGTCATCTTGGCCAGAGAGAAAGTGGGTTTCATAGAGGATCTTTTAGGGGATATGGGGCAGAGGAAGAAAGTGTGAGCCCTGGGGAAGAAATTGGAAAGGGAATGCTCATTGCACATGCCCACGGTGTAGCACCTTTTAACCACCCCCCACCCTAGAACCCACTGTGGTCACATGAGTAGGCGAGCAGTAGGTTTTTCAGCCAGAGGTTATTCTTCCCAGAATTCTGTGGAGCGCTATCAGCAATAACTGATTTTAAATCTGACGAGATAGCCCTGAATTCTTACCTAAATGCATCCTATTCCTGTCTCCTGCCAGTGTAGTCAGGACATGTGACTGGTGCTAAGCACCCGAAAATCCTCCAGGCAGATTGCACAGGGTAATCCTGACCAGTTCATGGTTTAAGTCCCAGCTTAAGTTTCAGCGTGGATCATCGGACTAGTTTTAGTTTAATTTCATGAATTTCATTTAGTTTTGTAGTATTAGCAAATCACACAAATCTGCAGTGTTGCACTAACACAGAGACATCTGCTGCAGCGAAGACTGGTGTATTACGTTGTACAAAACTTCCCACGCTGTGGATAGCTTTGCTGTAGATGGGCCCTGGGCACGGTGACATTCGGTGGCACGTGCTAGTCCTGAGAGAGGAGGAAAGATCCCAGGTTCCAAGGCCAGCCTGGGCTACATAGTCAAGCTTTGTATATTTCCTGTAAGATGTAGTTTACATTCATTTCTGGGTTATCTATAAAAAACGAACCACAATCTGATTAGCTTAAATTAATAGAAATTTTAAACTATAATAAAAAGAAAACAAAAATGGATAAAAATGAAAAATATTATTCTCTCCTAGTTCTGAAGGCTGGCAGCTCGAAAAGGTAGCACAGAGGCAGGCTGCCCTCAGGGCTCCAGGAAGACTGGCCGTGCACAGCTGGCGGGGTGTTGGCAGTCCTTGGCTGGCATTGCTTCAGTTTCTACCTCTGTCGTCGCATGGCGTTCTCCTTGAGTCTCCAGTCATGTTGGCTTAGGGCTTAGCCTAATGCAGTCTGCAAAGACGCTGGTTATACATACAGTTAGGGTCACACACCCTGGGAGCTAAAGACTGCCATTTTGGGTATGGGTGGGTATGGGGGTCACAGTTCAGCATTTAACAATGTAACTGTGTCTTGGTTTTACAAAGTCTTCTGAAATTCATAGTCATTCATCTTTTTTATTTCTCTGATTTCGATCGACTTGATTTTAACTTGTCCTTTTTGTTCTCTCATTTATTTTATAG
Seq C2 exon
CGAAAATGGGCTGGACTTTCTATTGGGCAGGACATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003905:ENSRNOT00000006361:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
NA
C2:
PF0235913=CDC48_N=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]