BtaINT0104262 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007235 | NTNG2
Description
Bos taurus netrin G2 (NTNG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099025]
Coordinates
chr11:102355221-102356914:+
Coord C1 exon
chr11:102355221-102355355
Coord A exon
chr11:102355356-102355926
Coord C2 exon
chr11:102355927-102356914
Length
571 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
ACCGCCCCTCCGCCCCGCAGCCA
3' ss Score
9.88
Exon sequences
Seq C1 exon
AGTGTAACTGCAACCAGATCGGCTCCGTGCACGACCGGTGCAACGAGACCGGCTTCTGCGAGTGCCGCGAGGGTGCGGCGGGGCCCAAGTGCGACGACTGCCTCCCCACGCACTACTGGCGCCAGGGCTGCTACC
Seq A exon
GTGAGTGCGCGCCGGGAGGATCCGGGGCTGTGGGGCCTGGGGTGGGGCCTGATGCTGCCGGGCGGGGCCAGTGGGTGGGCGGGGCCTGATGCTGCCGGGCGGGGCCTGATGCTGCCGGGCGGGGCCCTTGGGTGGGCGGGACCTGATGCTCCGGGGGCCTGTAGGTGGGTGGGGCCTGACGCTGCCGGGCCAGTAGGTGGGTGGGGCCTGACGCTGCAGAGCGAGGTCAGTAGGTGGGCGGGGCCTGATGTCAAAGGCGGGGTCTGGGTGATGGACGGGGCTTGAAGCGACTGTTTGTGGAGTAGGTACCGGGAAGGGAGTTGGAAGCGAAAGAGGAGCTGGGAGTTGGGAGTTGGCAGGAGGCGGGGGCTTTCGGGGAGGAAGGGAGGCTGTCCCAAGAAGTCACGGGCTGGCGGAGACCCGATGTTAGCCACCGGAAGAGGGTGGAAGGGCGCTCCAGGTACTTGGACCGGCACATCCCAGTCGCAGAAGCTCCAGCGCCAGTGGTGGTGCTAGTGGGTTCGGGGTGGACCAGACCGCCGCCCGCCTTAACCGCCCCTCCGCCCCGCAG
Seq C2 exon
CCAACGTGTGCGACGACGACCAGCTCCTGTGCCAGAACGGGGGCACCTGCGTGCAGAACCAGCGCTGCGCCTGCCCGCGTGGCTACACCGGCGCGCGCTGCGAGCAGCCCCGCTGCGACCCCGCCGACGACGAGGGCGGCCTGGACTGCGACCGCGCGCCGGGGGCTGCCCCACGCCCCGCCACCCTGCTCGGCTGCCTGCTGCTGCTGGGGCTGGCTGCCCGCCTGGACTGCTGAGCCCTGCGGAGGGCACCCCGGGCAGGGTGGGGGCCAGTCCGCGCGCCCTGTCGCGCCCTGCGCCCTTCGCCCGGAGAGCCAGGGGGCCCCCGGGGGCCGGCGTCCGAGGCCTGGCGGTGAGAAGGGTGCGGCCTGAGCTGCTCCCAGGTGCTACTCAGCAGAGTCCTCCCGCCCTGTCCCCCCTACCCCAGTGGCACCTGCCCCCGCCCCTGCACGGCAGCGGGGGATGCTGTGGGGTCCTGGCCCCAGCGGCCTGCGATTTTGGTCTTAGTTTTTCTTTTATATTACCCACCGCCCCTTTCCTTCTTTTTTTTTTTTTTGCTGGCAGTGAGACAGAGGGTGGGGAGAAACGCTGCTCACCCCACACCCTCAGATTCTGCCTCCTGCCACACACACGACTGTTGCAGACACCCCCAACGCCTGTGCCTGGCTCTCCACCAGCCAGCGGACCCGAAGTCCAGTTGCCTACAACTCTAGTCGCTGACGATTCTCTTTTCTATTCTTGGTTTTCCTTTGCAACCCACCAGACCCTAGGCCTTTCCAGAGGTCTGGGGACCAAGGAGCTCACTGTCTGGGGGCAAGGAGTCAGGACGGAGGGTTGGGAGGGCCGTACACTTCCTTTTGTAGAGAACTATTTTTGTTTGTATTAACTGCCCCTATGAAGGAGGGCCCCGGGCGGGGACGTTGGTCACCATGGTGGGTGGTTGATGGTGTATAATCTGACAGTAAAAAATCTGCTCACTGCTGCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007235:ENSBTAT00000064483:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(91.7=95.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(6.2=3.8),PF126612=hEGF=WD(100=16.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCACGCACTACTGG
R:
CTGGCTCTCCGGGCGAAG
Band lengths:
353-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development