HsaINT0116422 @ hg19
Intron Retention
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:14288]
Coordinates
chr9:135116297-135118220:+
Coord C1 exon
chr9:135116297-135116431
Coord A exon
chr9:135116432-135117262
Coord C2 exon
chr9:135117263-135118220
Length
831 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
ACCGCCCCCTCCGCCTGCAGCCA
3' ss Score
10.65
Exon sequences
Seq C1 exon
AGTGTAACTGCAACCAGATAGGCTCCGTGCACGACCGGTGCAACGAGACCGGCTTCTGCGAGTGCCGCGAGGGCGCGGCGGGCCCCAAGTGCGACGACTGCCTCCCCACGCACTACTGGCGCCAGGGCTGCTACC
Seq A exon
GTGAGTGCGCGCCGTCCCCCGTGGGCGGGGCCTGCGGAAAGGGGACGGGGCAGGACCGAGGCAGTGGGCGGGGCCTAGTGGGACGGGGCAGGGGCGGTGGACTGGGCCTAGCAAGACGGGGCAGGGCCGGGGAAGTGGGTGGGGCCTAGTGGGACGGGGAAGAGGCGGTGGGCGGGGCCTCGCGAGACGGGGCAGGGCCGGGGCAGTGGGTGGGGCCTAGTGAGAGCGGGGCAGGGTTGGGATAGTTGGCAGGGGCCTGGTGAGATGGGGCCGACCCGGGGGCGGTGGACGGGGCCTAGCGAGACGGAGCTGGCAGGTGGGCGGGGACAGGATGCTGCTGAGGTCCGGGGCCGGGCCGAGGGGCGGGTCCAAGAGCTCGGGGCGGGGCCTGATGCGACCTGAGGCACGGTGGTGCCTGGTGGGAACTACGAGAAAGACCGAGCTGGGGTTGGTTGGAAAGGTATTTGCGGGGACAGAGGGAGGGAGGCTGTCCAAGTCGGCGTTAGCCGCGGGCACAGGGTGAAAGGAGGCTCCAGGCGCGTGGAACAGCACGTGCACAGCTCTGGAGACTGCAGGCGCGTCTGAAGAACAGCACCGAGGCCAGTGGGGCGGGGAGAGAGGGGCAGCGGTGGGAGGCAGCCGGGGGCCAGATCTCGCCCGGGCGCCGTCACCCTCCGAGGGGGGACGTTTCGCACCCAGCGCGCCTGGAGCCTCCTACATCCCCGGCCCAGACGGCGCCCCCGGGATCTCGCACACCCTGCTTCGCAGGAGCTCGGAGGTTGGCGGGGGGACCGGGCCACCCCCCGTGCTGACCGCCCCCTCCGCCTGCAG
Seq C2 exon
CCAACGTGTGCGACGACGACCAGCTGCTGTGCCAGAACGGAGGCACCTGCCTGCAGAACCAGCGCTGCGCCTGCCCGCGCGGCTACACCGGCGTGCGCTGCGAGCAGCCCCGCTGCGACCCCGCCGACGATGACGGCGGTCTGGACTGCGACCGCGCGCCCGGGGCCGCCCCGCGCCCCGCCACCCTGCTCGGCTGCCTGCTGCTGCTGGGGCTGGCCGCCCGCCTGGGCCGCTGAGCCCCGCCCGGAGGACGCTCCCCGCACCCGGAGGCCGGGGGTCCCGGGGTCCCGGGGCGGGGCCGGCGTCCGAGGCCGGGCGGTGAGAAGGGTGCGGCCCGAGGTGCTCCCAGGTGCTACTCAGCAGGGCCCCCCGCCCGGCCCGCGCTCCCGCCCGCACTGCCCTCCCCCCGCAGCAGGGGCGCCTTGGGACTCCGGTCCCCGCGCCTGCGATTTGGTTTCGTTTTTCTTTTGTATTATCCGCCGCCCAGTTCCTTTTTTGTCTTTCTCTCTCTCTCTTTTTTTTTTTTTTTTTCTGGCGGTGAGCCAGAGGGTCGGGAGAAACGCTGCTCGCCCCACACCCCGTCCTGCCTCCCACCACACTTACACACACGGGACTGTGGCCGACACCCCCTGGCCTGTGCCAGGCTCACGGGCGGCGGCGGACCCCGACCTCCAGTTGCCTACAATTCCAGTCGCTGACTTGGTCCTGTTTTCTATTCTTTATTTTTCCTGCAACCCACCAGACCCCAGGCCTCACCGGAGGCCCGGTGACCACGGAACTCACCGTCTGGGGGAGGAGGAGAGAAGGAAGGGGTGGGGGGCCTGGAAACTTCGTTCTGTAGAGAACTATTTTTGTTTGTATTCACTGTCCCCTGCAAGGGGGACGGGGCGGGAGCACTGGTCACCGCGGGGGCCGATGGTGGAGAATCCGAGGAGTAAAGAGTTTGCTCACTGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-NTNG2:NM_032536:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(91.7=95.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(6.2=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCACGCACTACTGG
R:
CACCCTTCTCACCGCCCG
Band lengths:
365-1196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)