MmuINT0111290 @ mm10
Intron Retention
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29194821-29195781:-
Coord C1 exon
chr2:29195647-29195781
Coord A exon
chr2:29195054-29195646
Coord C2 exon
chr2:29194821-29195053
Length
593 bp
Sequences
Splice sites
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
3' ss Seq
CTGTCCCCTCCGGCCCGCAGCCA
3' ss Score
9.06
Exon sequences
Seq C1 exon
AATGTAACTGTAACCAGATCGGCTCTGTGCACGATCGATGCAATGAGACAGGCTTCTGCGAGTGCAGGGAGGGCGCAGTGGGGCCCAAGTGCGACGACTGCCTTCCTACACACTACTGGCGCCAAGGATGCTATC
Seq A exon
GTGAGTAGACCGGCCCCTGAAGACAGACCCTTTAGGCTGGGTGCGTGGTCCAGCATGGTGGGAGGGGCCTACGTGGGCCTGCTGTTAGCTGGGGGTGGGCTTTGAACACGTGGCTGCAGTGAGAAAGGTCTGATGCAACCAGGGTAGGGGTTCAAAGTGGCGGGGGCGGGGGTCGAGTGGGCATTGCCCGGTCTTCAGTGGACTGAGTCCGTGGAAAGTGGGAGCCAGGAAAGGGGGGGGGGATGTAGGGATTGAAGGGGAGCTGACTAAAGTTGGCTGAGAGCGCAGGAGTTTGCACTCAAGAAATGAAGGCTTGGCGAGACCCGAGGAGCATAGGCTGTCAGACCGCTCCAGGTACACGCAGCAGATAGCAGTTGATTCCAGAGAACCGCGCCACTGCCGGGGAGGAACGGGAGAGAATGGGGGTCAATGGCGGGGGACAGCCAGGAGCCAGGTCCCATCCCTTGCAGGGATGTTTCTCACTGTGTTCGTTCTAAGTACCGGCCCCCTGGGGGGGGGGGCTGTCCCAGCTCCCTATTGCAGAAGCTCAGTCCATCCCCACAGCTGCCTCAACTGTCCCCTCCGGCCCGCAG
Seq C2 exon
CCAATGTGTGCGACGATGACCAGCTGCTCTGCCAGAATGGCGGCACCTGCCAGCAGAACCAACGCTGCGCCTGCCCGCCCGGCTACACCGGCATTCGCTGTGAGCAGCCCCGCTGTGACCTCGCCGACGACGCTGGCCCGGACTGTGACCGCGCGCCAGGCATCGTCCCGCGCCCCGACACCCTGCTCGGATGCCTGCTGCTGCTCGGGCTGGCCGCCCGTCTGGCCTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513:ENSMUST00000048455:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(91.7=95.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(6.2=3.8),PF126612=hEGF=WD(100=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAACTGTAACCAGATCGGCT
R:
CAGCAGGCATCCGAGCAG
Band lengths:
334-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types