GgaINT0125722 @ galGal4
Intron Retention
Gene
ENSGALG00000003677 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr17:6482131-6482905:+
Coord C1 exon
chr17:6482131-6482265
Coord A exon
chr17:6482266-6482712
Coord C2 exon
chr17:6482713-6482905
Length
447 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CCATCCCTCCTTCCCTACAGCCA
3' ss Score
9.74
Exon sequences
Seq C1 exon
AATGTAACTGCAATCAGATCGGCTCCCTGCACGACCGCTGCAATGAGACCGGCTACTGTGAATGCAAGGAAGGGGCCACGGGGCCAAAGTGCGACGACTGCCTGCCCAACTACTACTGGAGACAGGGCTGCTTCC
Seq A exon
GTGAGTAGCCGGCAGCACTGCGGGCAGCCACCCCAACAGGGCACAGGGAGGTGGGAGGTGGGCATGGACATGGGGGGAGCTCCAATGAGGAGGGAATCTCCCATGAGAAAGGGATCTCCAATGTGGAGAGGATCTCCAGTGAGGGAAGTGGTGTCCCACCAGGGGTGGCACTTCCAGAGAGGTGCAGATCTCCAACAAGGTGTGTGTCTCTGCCCGTCCCATGGTGAGGGGTGAGCTTGGTCATTCCTCCCAAATCCAAAACAGCTTTGAAGTCCGCAGCCCCAGCTCTGTTCCTCTGGCATTGGGACTGGTCTCGCTGTGTAAGGGTTTGACGATGGAGCCCCTCGGAGCCAAAGCAGAAAACCAAAACCTTGCTGGTTCCTGCTGCATCCGAGGGGCTTCACACCCCGCAGCACAACTCCCACCGCCATCCCTCCTTCCCTACAG
Seq C2 exon
CCAACGTATGTGATGATGAACTCCTGCTCTGCCAGAACGGCGGCACCTGCTACCAGAACCAGCGCTGCATCTGCCCCGTGGGCTTCAAGGGGGTCCTGTGCCAGCAGTCACGGTGCGAAGCTGACAGAAAGGACTGTGATGGTGCCTCCAGCACACGGGCCGCCATCAGCACCGTCCTCCTCGGTGTGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003677:ENSGALT00000005827:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(91.7=95.7),PF079748=EGF_2=PU(5.6=4.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(6.2=4.6),PF079748=EGF_2=PD(91.7=50.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAACTGCAATCAGATCGGCT
R:
CCAGCACACCGAGGAGGA
Band lengths:
326-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]