BtaINT0105363 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99055885-99057093:+
Coord C1 exon
chr11:99055885-99056055
Coord A exon
chr11:99056056-99056932
Coord C2 exon
chr11:99056933-99057093
Length
877 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GGCTGCGTGCCCCCACACAGGTC
3' ss Score
7.62
Exon sequences
Seq C1 exon
AATCCACCTCACTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTTTTGCACGCGGTTAAGTGACCTCTCTACAGAAGATGACGACTCCGGCCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTTTAATGAACGCGGTTGGTTGTCTCAAGTCTGAG
Seq A exon
GTGAGGGAGGTAGGGGCTGGACTGACTAGTGTCCCGAGGCCGCTGGAGACCTGTCAGGTGGGGTCCTGGTGGACACCCCCTTCCAGCTGCCTCTGCAGCCTCCCAGGGTTTCAGAGGCCCTTGTGGGGGGCAGTCAGGGCAACCTGGGATTCCTCTCCATCAAGCATTTAGCCCGGGCCTGGGCCTGGCCCTGACCTTGCCGGGGGCTCTGTATGGATGGCCTGGTTTGATTTTTTTTTTTGGAACAGTAAATGAAGTCGATGGTATTATTGTCCCTGTTTTGGAGATGAAATGACTGGAACTCTAGGGCCTCTGTTTTCCATTTTTATGCAGAAGTTTAAAAAAAATGAAGCAATGCCCCAGAGAGGCGGAGGAAGTTTGTCCTCAGTTTCTGGGCTGTGTCTCTGGGGGGAAGTGGCCGTGGACTCCAGGCTGTGGCTGCCTGTGGGGCCTGTGTCCTTGGTCGCCCCCTACGCCCAGGACCCCCGGGCCCTCCCCAGAGAACCTGGGGCTGGTGGCTGCCTGGCAACAGGCCCGCCTTCCTCCACAGCCTGCGGGGCAGGGGCCTTTTGGTGACACCTCCTCTGGTGGTGTGCCAGCCAAACCACCGTTGGTATCCTGGCTCCGTGCCCAAGCAGAAAGTCACCCAGGCACCGCCCCCTCCATTTCCTCAGTTTCGAGATGAGAGGAACAGTGACCGCCCAGGGTCTTTGTGACGCCTGACTGAGCTGCGCCCAGAGGACCCCCACCCCCACCCCCACCATGACACTTGAGCACTCAGTCCAAGGTGCCCTGCCTTGGTCCTGAGCGACGGGCCTCGAGATGCGGGGAAGGGCTGCCTCCCCTCAGTGGGCCCTGGCTGCGTGCCCCCACACAG
Seq C2 exon
GTCAAGATGCAGAAGGGAGAGCGCCAGATGGCCAAAAGGTTCCTGGAGGAGCGGAAGGAGGAGCTGGAGGAGGTGGCCCAAGAGCTGGCCGAGACCGAGCACGAGAACACGGTGCTGCGGCACAACATAGAGCGCATCAAGGAGGAGAAGGACTACACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567:ENSBTAT00000020325:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.685
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PU(26.9=43.9)
A:
NA
C2:
PF104734=CENP-F_leu_zip=FE(57.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCACTGCCTGGAGATCA
R:
TGGTGTAGTCCTTCTCCTCCT
Band lengths:
327-1204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development