HsaINT0117822 @ hg19

Intron Retention

Gene

ENSG00000136811 | ODF2

Description

outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]

Coordinates

chr9:131231462-131233747:+

Coord C1 exon

chr9:131231462-131231632

Coord A exon

chr9:131231633-131233586

Coord C2 exon

chr9:131233587-131233747

Length

1954 bp

Sequences

Splice sites

5' ss Seq

GAGGTGAGG

5' ss Score

8.41

3' ss Seq

GCCTGGGTCCCCCTGCTCAGGTC

3' ss Score

7.54

Exon sequences

Seq C1 exon

AATCCACCTCATTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTCAGTGATGCGGTTAAGTGACCTCTCTACAGAAGATGATGACTCAGGTCACTGTAAAATGAACCGTTATGATAAGAAGATTGATAGTCTAATGAATGCGGTTGGTTGTCTGAAGTCTGAG

Seq A exon

GTGAGGGAGGTAGGGGGCTGGGATAGCTACTACCCTGAGGATGTGCAGGAGCACCCAGGTGGATTTCCTGCCTGGTCCCTCAGCCTGCGTCTGCAGGCCTTCAGGCCTCCTCTGCAGGGTTGCCCCGGGCTTCAGTTGCCTGCCCCGGGAGGTAGCTGGGGCAGCATGGGATCCCATCCCACCAACAAGGGCCCTCTCTATTGAGCATGTAGCTGTCCTGGTGCTCCACATGGGTGGTCCAATTTGAATTTTTACAACAGCATGTGAAGCCAGTGGTGTTACTGTCCTCATTACAGAGATGAAATACCTAGGAAACTAGGGCCTATGCCTTCCGCTTTATATAAGGTTTAACAAAAACAGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGATCCCCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACACGGTGAAACCCTGTCTCTACTAAAAAACAAAAATTAGCCATGCGTGGTGGCGTGCACCTGTAGTCTCAGCTGCTCAGGAGGCTGAGGTGGTAGAATTGCTTGAACCCAGGAGCCAGAGGTTGCAGTGAGCTGAGATTGTGCCATTGCACTGTAGCCTGGGCGACAGAGAGAGTCTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATAAATAAAAAAATTAACAAAAACAAAGCCCCAAAGAGGCCAAGGAAGTTTGTCCTCAGTTGCCGTGCTCTCTCTTGGGGTGGGATGTGACAATGGAATTGGAAATAGAACCTGGAAGTCCAAGGTCCCCAACTAGGAAATTGGCAGAGTTGTCATTAAAATCCAGGCCTTAGACTTGGATTGCTATGTCAGCCTATGTCTTCACTGCTAACACGACCTGTGTCTTTAATCCTCCACCCTGTACTCGAGGTCCAGGGAACCTCCTGGAGAACCTAGGGCTGGCTGCCTAGAATAGGCCCTTCTTGGCCAGGCGTGGTGGCTCATGCCTATAATCCTAGCACTTTGGGAGACTGAGGAGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTTGCCAGGCACACGCCTGTAATCCCGGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTACCGCTGCACTCCAGCCTGGATGACAGAGTGAGACCCTGTTTCAAAAGAAAAAAAAAAAAAGCCCTTCTTCCCCTATAACTCAAAGTGCAAGAGCCTTTTTGTGACATCTCTCCTCCTATGGTGTGCCAGCCAAACCACGGTTTGCAACCTGGCTTCGTTCCCAACCCACAAGTCACTGGGGCTCTCTGTACTGAGTTTCCTCATCTACAAAAAGAAAATCAGCATCTCCCAGGAGAGTCAGTCTTCATGGCAGTTAACTGAGATTGCACCCATAAGGCCCTGGCATGCAGCCTGTGTAGTTCTCAATTGGAAGGCTCCTTATTTTTTTGTTTTTGTTTTTTTTTTTTTGAGATGGAGTCTCACTCTTGTCCGCCCAGGCTGGAGTGCAGTGGGCACGATCTCGGCTCACTGCAACCTCTGGCTCCTGGGTTCAGGCGACTCTCTTGCTTCAGCTTCCAGAGTAGCTGGGATCACAGGCATGTGCCACCACATCTGGCTAATTTTTGTATTTTCAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCAAAAGTGACCTACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCGGGGCCTTATTTTGGTCCAAAGCATTGAGCCTAGCAATGTGGCATAGAGGAAGGACCTCCCTTCAGTGGCCCCTGCCTGGGTCCCCCTGCTCAG

Seq C2 exon

GTCAAGATGCAAAAAGGTGAGCGCCAGATGGCCAAAAGGTTCCTGGAGGAACGGAAGGAAGAGCTGGAGGAGGTGGCCCACGAACTGGCTGAGACTGAGCACGAGAACACGGTGTTGAGGCACAACATCGAGCGCATGAAGGAGGAGAAGGACTTCACCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136811-ODF2:NM_002540:7

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.640 A=NA C2=0.768

Domain overlap (PFAM):

C1:

PF041569=IncA=FE(29.0=100),PF104734=CENP-F_leu_zip=PU(24.0=43.9),PF0149614=V_ATPase_I=PU(22.2=49.1),PF041117=APG6=PU(27.2=64.9),PF134761=AAA_23=FE(35.2=100)

A:

NA

C2:

PF041569=IncA=FE(27.5=100),PF104734=CENP-F_leu_zip=FE(51.0=100),PF0149614=V_ATPase_I=FE(42.1=100),PF041117=APG6=FE(39.0=100),PF134761=AAA_23=FE(33.3=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000361882