RnoINT0105053 @ rn6
Intron Retention
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8464272-8465697:+
Coord C1 exon
chr3:8464272-8464442
Coord A exon
chr3:8464443-8465536
Coord C2 exon
chr3:8465537-8465697
Length
1094 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCTGTGTCCCCTTCCCCAGGTC
3' ss Score
11.82
Exon sequences
Seq C1 exon
AATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGTAAGATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAG
Seq A exon
GTGAGGGGCTACGGGGTTAGACAGCTGGCACCCTGAGAACAACCAGTTTGGGCTAAGCTGCTTAGCTAGTGGATCCTTCCCACAGGCTGCCTCCGTGGATCTCCTGCCTGTCCTCAGCAAGCCTTCTTCGCATGGCATCTGTTTGGAGTGGTCAGTGGGCAGCTTGAGTTTCCACCATGCTGGGAGCCCTCTCTGAATACTTAGCTTTTCTGGCACTCTGAGTGGGTGGCCAGATTTGGTTCACATCATCGGTGAAGGTCCTGTGTTAGCCCTTATTCATTTGTTGTGTGAGGCATCATTACATAGCTCTGGCTGGCCTCAGACTTAAGCCATCCTCTAGTGCCTGCTGAGGGCTGCAGTTTCAGGAGTGTGCCGCTCTCTGGCTCAGGGCTTCCACCTAGATAAAGTGTCTGTAAAACAGAGAGCACAGCCTTTTCTGCTTAGAAAGGCTGAACAGGAATAGAGAAGACAGAGGAAATCTCTCTTCGCATGTGGCAGGGACACTTGTGAGGAGGGAGATGGGAATGGGGCTGGAAATAGCCCCTATGTGGACCCTGACCAGGAAGCAGGGAAGGCTGGCATTAAAAGCCAGGTCTTGACTGCTTAAGGGACCTGTTTGTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAAGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGACCTGTTTCTTTTTAACTCTCCACTCTACTGGAGGTTCTAAGACCTTTCTGGCAACAGGCCCTCTGACCTCCATAGCTCACTGTGCTTTTTTTGTGACATCTTCCCTCCTGTGGCATGCCAACTGTACTACTGTTGCTGCCTGGCCCCACCCCTGGCTAGCACGCATCACTCAGCTTCTTTGTACTCAGGTTTTTCATGTACAGACAGGGTAGACTGTATGCCTGGAGGAAGAGGACAGTCAATGTTTGTGTGACTGTTTACGGGACAATGTCTGGAAGCTCCCAGGCACAGAGCCCTATCACTTTTCTTGGTGGGGTGACATGGAACAGTGGGTCTTCAGGGACGAGCCATCCTTTTGGTTTCCCTTTCCTGTGTCCCCTTCCCCAG
Seq C2 exon
GTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGAACTGGAGGAGGTAGCACATGAGCTTGCAGAGACGGAGCATGAGAACACAGTGCTCAGACACAACATCGAGCGCATCAAGGAGGAGAAGGACTTCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584:ENSRNOT00000020073:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.564 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PU(26.7=42.1)
A:
NA
C2:
PF104734=CENP-F_leu_zip=FE(58.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTCATTGCCTGGAGAT
R:
GGTGAAGTCCTTCTCCTCCTTG
Band lengths:
328-1422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]