BtaINT0105370 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57851776-57852106:+
Coord C1 exon
chr3:57851776-57851861
Coord A exon
chr3:57851862-57851943
Coord C2 exon
chr3:57851944-57852106
Length
82 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TATATGTCTTCTGTAAAAAGAAA
3' ss Score
3.44
Exon sequences
Seq C1 exon
GTTGACGAAAATCATAGTCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAATTATCTTATTCAGTTAAAGTGTGAAAACCTTAAACA
Seq A exon
GTAAGTATTAAATTGACTTAAAGTTGGTATTACATTTTTTTCTACACACTATAATTTTAAAATATATGTCTTCTGTAAAAAG
Seq C2 exon
AAAATTAGAACAGATGGATGCAGAAAATAGAGAGCTTGAAAAGAAGCTGGCAAACCAAGAAGAATGTCTTAAGCACAGCAATCTTAAATTTAAAGAGAAATCTGCAGAATATACAGCACTGGCCAGACAGCTGGAAGCTGCTTTAGAAGAAGGAAGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907:ENSBTAT00000017157:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTCTCTGGAAGAGGAAAA
R:
GGCCAGTGCTGTATATTCTGCA
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]