GgaINT0038676 @ galGal3
Intron Retention
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16717307-16717642:+
Coord C1 exon
chr8:16717307-16717392
Coord A exon
chr8:16717393-16717479
Coord C2 exon
chr8:16717480-16717642
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TTAAACTCTTTTGCATAAAGGAT
3' ss Score
5.07
Exon sequences
Seq C1 exon
GAGGAAGATGGTGTAAATTCTGTGGGTAATTGCTCCTTAGAAGAAGAAAACAGTACCATTCAGAAGAAATATGAACATCTTAAGAG
Seq A exon
GTAATTCTTAAGAAAAAAATGGACTGTGACTGATTTGTGCTATTACACTGTACTGAAATATAACACGTTAAACTCTTTTGCATAAAG
Seq C2 exon
GATTCTAGAAAATATGCAATTTCAAAATGAAGAACTTGCTTATCTGATCAAAAAAGAAGATGAGAGTCTTCAGTGCAGTAAATTGCAGCTTGAAGAGAAAATTGCAGAGTATAATAGTTTAACCAAACAACTGGAATCTGCTTTGGAGGAAGGAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804:ENSGALT00000038838:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTGGGTAATTGCTCCTT
R:
TGCAATTTTCTCTTCAAGCTGCA
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]