RnoINT0105063 @ rn6
Intron Retention
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251027832-251028193:+
Coord C1 exon
chr2:251027832-251027917
Coord A exon
chr2:251027918-251028030
Coord C2 exon
chr2:251028031-251028193
Length
113 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TGTGTGTATATGATATAAAGAAA
3' ss Score
-0.48
Exon sequences
Seq C1 exon
GTTGATGGAAACTATAGCCTTCTGACCAAGCTTTCTCTTGAGGAGGAAAATCATCTGATTCAGTTAAAGTGTGAGAACCTTAAAGA
Seq A exon
GTAAGTGTCAAGTAGACTTACAACTGATGTCACATTTCCTCATTCAGTGTAATCTTTGTGTATGTAGATGATATATATATGTGTGTATGTGTATGTGTGTATATGATATAAAG
Seq C2 exon
AAAATTAGAACAGATGGATGCGGAGAATAAAGAGCTTGAGAGGAAGCTGGCCGACCAAGAGGAGTTTCTCAAGCACAGTGACCTGGAGCTGAGAGAGAAGGCTGCAGAATGCACAGCACTGTCCAGGCAACTGGAAGCTGCCCTGGAAGAAGGGAGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059:ENSRNOT00000018905:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.345
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(9.7=100)
A:
NA
C2:
PF0003816=Filament=PD(1.0=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACTATAGCCTTCTGACCA
R:
CTTTTGTCTCCCTTCTTCCAGG
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]