RnoEX0062104 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251027832-251030225:+
Coord C1 exon
chr2:251027832-251027917
Coord A exon
chr2:251028031-251028193
Coord C2 exon
chr2:251030100-251030225
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTATATGATATAAAGAAA
3' ss Score
-0.48
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTTGATGGAAACTATAGCCTTCTGACCAAGCTTTCTCTTGAGGAGGAAAATCATCTGATTCAGTTAAAGTGTGAGAACCTTAAAGA
Seq A exon
AAAATTAGAACAGATGGATGCGGAGAATAAAGAGCTTGAGAGGAAGCTGGCCGACCAAGAGGAGTTTCTCAAGCACAGTGACCTGGAGCTGAGAGAGAAGGCTGCAGAATGCACAGCACTGTCCAGGCAACTGGAAGCTGCCCTGGAAGAAGGGAGACAAAAG
Seq C2 exon
GTTTCTGAAGAAGTAGAGAAAATGTCGTCTAGAGAGAGGGCTTTACAAATGAAAATATCAGATCTGGAAACCGAGCTTAGAAAGAAAAATGAAGAACAAAACCAACTTGTTGGCAACATGAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.345 C2=0.762
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(9.7=100)
A:
PF0003816=Filament=PD(1.0=5.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAAACTATAGCCTTCTGACC
R:
AGTGCTCATGTTGCCAACAAGT
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]