MmuEX6074539 @ mm9
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144811495-144814049:+
Coord C1 exon
chr3:144811495-144811580
Coord A exon
chr3:144811879-144812041
Coord C2 exon
chr3:144813924-144814049
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTATGTGATATAAAGGAA
3' ss Score
3.33
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTTGATGGAAACCAAAGCCTTCTGACCAAGCTTTCTCTTGAGGAAGAAAATCATCTCATTCAGTTAAAGTGTGAGAACCTTAAAGA
Seq A exon
GAAACTAGAGCAGATGGATGCAGAGAATAAAGAGCTTGAGAAGAAGCTGGCCGACCAAGAGGAGTGTCTCAAGCACAGTGACCTGGAGCTGAAAGAGAAGGCTGCAGAGTACACAGCCCTGTCCAGGCAACTGGAAGCCGCTTTGGAAGAAGGAAGACAAAAG
Seq C2 exon
GTTTCAGAAGAAGTAGAGAAAATGTCATCTAGAGAGAGGGCTTTACAAATTAAAATATTAGATCTGGAAGCTGAGCTTAGAAAGAAAAATGAAGAACAAAACCAACTTGTTGACAAGATGAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-'31-23,'31-22,32-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.316 C2=0.381
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(11.2=100)
A:
PF059116=DUF869=FE(21.7=100)
C2:
PF059116=DUF869=PD(12.4=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGAAACCAAAGCCTTCTGA
R:
CTTGTCAACAAGTTGGTTTTGTTCT
Band lengths:
202-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: