HsaEX6031932 @ hg38
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86352859-86354859:-
Coord C1 exon
chr1:86354774-86354859
Coord A exon
chr1:86354530-86354692
Coord C2 exon
chr1:86352859-86352984
Length
163 bp
Sequences
Splice sites
3' ss Seq
TATATGTTTTCTGTAAAAAGAAA
3' ss Score
3.35
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
Seq A exon
AAAATTAGAACAGATGGACGCAGAAAATAAAGAGCTTGAGAAGAAGCTGGCAAACCAAGAAGAATGTCTTAAGCACAGCAATCTTAAGTTTAAAGAGAAATCTGCAGAGTATACAGCATTGGCCAGACAACTGGAAGCTGCTTTAGAAGAAGGAAGACAAAAG
Seq C2 exon
GTTGCTGAAGAAATAGAGAAAATGTCATCTAGAGAGAGTGCTTTACAAATTAAAATATTAGATCTGGAAACTGAGCTTAGAAAGAAAAATGAAGAACAAAATCAACTTGTTTGCAAAATGAACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'51-48,'51-46,52-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.156 C2=0.347
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(9.8=100),PF131661=AAA_13=PD(5.4=37.9),PF059116=DUF869=FE(14.1=100)
A:
PF0003816=Filament=PD(1.0=5.5),PF059116=DUF869=FE(27.3=100)
C2:
PF059116=DUF869=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAAATCACAATCTTCTGACA
R:
ACTGTTCATTTTGCAAACAAGTTGA
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains