HsaEX6031932 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86818542-86820542:-
Coord C1 exon
chr1:86820457-86820542
Coord A exon
chr1:86820213-86820375
Coord C2 exon
chr1:86818542-86818667
Length
163 bp
Sequences
Splice sites
3' ss Seq
TATATGTTTTCTGTAAAAAGAAA
3' ss Score
3.35
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
Seq A exon
AAAATTAGAACAGATGGACGCAGAAAATAAAGAGCTTGAGAAGAAGCTGGCAAACCAAGAAGAATGTCTTAAGCACAGCAATCTTAAGTTTAAAGAGAAATCTGCAGAGTATACAGCATTGGCCAGACAACTGGAAGCTGCTTTAGAAGAAGGAAGACAAAAG
Seq C2 exon
GTTGCTGAAGAAATAGAGAAAATGTCATCTAGAGAGAGTGCTTTACAAATTAAAATATTAGATCTGGAAACTGAGCTTAGAAAGAAAAATGAAGAACAAAATCAACTTGTTTGCAAAATGAACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'25-28,'25-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.155 C2=0.343
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(19.2=100),PF127182=Tropomyosin_1=PU(8.9=37.9),PF041117=APG6=PU(16.9=79.3)
A:
PF059116=DUF869=FE(37.0=100),PF127182=Tropomyosin_1=FE(43.9=100),PF041117=APG6=FE(39.7=100)
C2:
PF059116=DUF869=FE(28.1=100),PF127182=Tropomyosin_1=FE(33.3=100),PF041117=APG6=FE(30.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAAATCACAATCTTCTGACA
R:
ACTGTTCATTTTGCAAACAAGTTGA
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)