GgaEX0009701 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16717307-16718674:+
Coord C1 exon
chr8:16717307-16717392
Coord A exon
chr8:16717480-16717642
Coord C2 exon
chr8:16718549-16718674
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTAAACTCTTTTGCATAAAGGAT
3' ss Score
5.07
5' ss Seq
ATGGTACTG
5' ss Score
4.16
Exon sequences
Seq C1 exon
GAGGAAGATGGTGTAAATTCTGTGGGTAATTGCTCCTTAGAAGAAGAAAACAGTACCATTCAGAAGAAATATGAACATCTTAAGAG
Seq A exon
GATTCTAGAAAATATGCAATTTCAAAATGAAGAACTTGCTTATCTGATCAAAAAAGAAGATGAGAGTCTTCAGTGCAGTAAATTGCAGCTTGAAGAGAAAATTGCAGAGTATAATAGTTTAACCAAACAACTGGAATCTGCTTTGGAGGAAGGAAGAAAAATG
Seq C2 exon
GTAGCTGAAGAATTTGAAAAAATGTCATACTTAGAACAAGCCCTTCAGACAAAAATGCTCATTCTTGAAAATGAAGTGAGAGAGAGACAGGAGGAGAAAAAAGAACTTCTATGTGCATTTCACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'21-24,'21-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATGGTGTAAATTCTGTGGGT
R:
GTGAAATGCACATAGAAGTTCTTTTT
Band lengths:
207-370
Functional annotations
There are 0 annotated functions for this event