GgaEX0009701 @ galGal4
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14948896-14950263:+
Coord C1 exon
chr8:14948896-14948981
Coord A exon
chr8:14949069-14949231
Coord C2 exon
chr8:14950138-14950263
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTAAACTCTTTTGCATAAAGGAT
3' ss Score
5.07
5' ss Seq
ATGGTACTG
5' ss Score
4.16
Exon sequences
Seq C1 exon
GAGGAAGATGGTGTAAATTCTGTGGGTAATTGCTCCTTAGAAGAAGAAAACAGTACCATTCAGAAGAAATATGAACATCTTAAGAG
Seq A exon
GATTCTAGAAAATATGCAATTTCAAAATGAAGAACTTGCTTATCTGATCAAAAAAGAAGATGAGAGTCTTCAGTGCAGTAAATTGCAGCTTGAAGAGAAAATTGCAGAGTATAATAGTTTAACCAAACAACTGGAATCTGCTTTGGAGGAAGGAAGAAAAATG
Seq C2 exon
GTAGCTGAAGAATTTGAAAAAATGTCATACTTAGAACAAGCCCTTCAGACAAAAATGCTCATTCTTGAAAATGAAGTGAGAGAGAGACAGGAGGAGAAAAAAGAACTTCTATGTGCATTTCACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATGGTGTAAATTCTGTGGGT
R:
GTGAAATGCACATAGAAGTTCTTTTT
Band lengths:
207-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]