DreEX6050579 @ danRer10
Exon Skipping
Gene
ENSDARG00000020702 | odf2b
Description
outer dense fiber of sperm tails 2b [Source:ZFIN;Acc:ZDB-GENE-041008-119]
Coordinates
chr8:31017454-31020147:+
Coord C1 exon
chr8:31017454-31017554
Coord A exon
chr8:31019743-31019905
Coord C2 exon
chr8:31020022-31020147
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTGTTGCTACTCAGGAA
3' ss Score
7.05
5' ss Seq
CAGGTCATA
5' ss Score
3
Exon sequences
Seq C1 exon
GTGGAGCAGCAGAGTAGTAAAATAGAGTCACTCCAGGAGAAGAACTTATTTCTGCTTGAAGAAAATATGCAGCTGAAACGCTCAACGGAAAGCATTGAAAG
Seq A exon
GAAGATGGAGGACACGAGTGCTCAGAACAAGGATCTTCTTCAGCTGGTCTCCAAGCGTGAAGAGACCATCAAGAGCTGCCAGCAGCATCTGGAGGAGAAGAGCCGCGAGTGTGAGTGTCTGTTCAGACAGCTGGAGCAGAGCAGAGTGGAGGCACAGAGACAG
Seq C2 exon
GGGGAGCAGAGTCTGGAGCGGCTGATTTCTAAAGAGCGATCCACTCAGTCCAGAATGCTGGATCTGGAGAGCCAACTGAGCCTGGCCAAAAATGAGCTGAGTCAAACACGCCGCAGCAAAGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020702-'19-27,'19-25,21-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.345 C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF087025=Fib_alpha=PU(7.3=9.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCAGCAGAGTAGTAAA
R:
ATCATCTTTGCTGCGGCGTG
Band lengths:
227-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]