GgaEX1041146 @ galGal4
Exon Skipping
Gene
ENSGALG00000004767 | ODF2
Description
outer dense fiber protein 2 [Source:RefSeq peptide;Acc:NP_001012817]
Coordinates
chr17:5125497-5126645:+
Coord C1 exon
chr17:5125497-5125597
Coord A exon
chr17:5126114-5126276
Coord C2 exon
chr17:5126520-5126645
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTGTCTTGACCTAGAAA
3' ss Score
7.39
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATTGAGCTCCAGGGGGACAAAATGGAGATGACAAGAGAGAGGTATCAGTCTGCCCAGGAGGAGAAAAAGCAGCTCACCTTGAAGGCGGAGGAGCTAGAAAG
Seq A exon
AAAACTAGAAACCACGAGCACCCAGAACATAGAGTTCCTCCAGGTCATAGCAAAGCGTGAGGAGTCGATCCATCAGTGCCAGCTGCGCTTAGAAGAGAAGACCCGGGAGTGCAGCTCCTTGGCTCGGCAGCTGGAAATGGCCATTGAGGATGCCAAACGACAA
Seq C2 exon
GTCGAACAAACTCGAGAACGAGCAACATCCAGAGAGAGGGCAGCCCAGTCCAAGGTGCTGGATTTGGAGACCCAGCTGAGTAGGACGAAGACAGAGCTGAACCAACTGCGTCGGAACAAAGAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767-'35-35,'35-32,36-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=0.127 C2=0.881
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGCTCCAGGGGGACAAA
R:
GTCCTCTTTGTTCCGACGCAG
Band lengths:
227-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]