MmuEX6100115 @ mm10
Exon Skipping
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29923539-29926829:+
Coord C1 exon
chr2:29923539-29923639
Coord A exon
chr2:29925940-29926102
Coord C2 exon
chr2:29926704-29926829
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATGGAGTGCTCTCACCTAGGAA
3' ss Score
3.71
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATCGAACATCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAGCTGAGTCAGAAGGTGGATGAACTTGAGAG
Seq A exon
GAAACTGGAGGCTACCAGCGCCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGGCTCAGCTGCGGTTGGAGGAGAAAACGAGGGAGTGTGGGTCATTGGCGAGGCAGTTGGAGAGTGCCATTGAAGATGCCAGGCGACAG
Seq C2 exon
GTGGAGCAAACCAAGGAACAGGCACTCTCCAAGGAACGAGCAGCCCAGAGCAAAATCCTGGACCTTGAGACTCAGCTGAGCAGGACCAAGACAGAACTTGGCCAGCTGCGGCGGACTCGTGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-'68-71,'68-70,72-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.221 C2=0.762
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACATCAGGGGGACAAG
R:
ATCATCACGAGTCCGCCGC
Band lengths:
227-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types