RnoEX0062094 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8484887-8488037:+
Coord C1 exon
chr3:8484887-8484987
Coord A exon
chr3:8487133-8487295
Coord C2 exon
chr3:8487874-8488037
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATGGAGTGCTCTCACCTAGGAA
3' ss Score
3.71
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ATCGAACATCAGGGGGACAAGCTGGAGTTGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAACTGAGTCAGAAGGTGGATGAACTGGAGAG
Seq A exon
GAAACTGGAGGCCACCAGCACCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGGCTCAGCTGCGGCTGGAGGAGAAAACGAGGGAGTGTGGGTCCTTGGCGAGGCAGTTGGAGAGTGCCATTGAAGATGCCAGGCGACAG
Seq C2 exon
GTGGAGCAAACCAAGGAACAGGCGCTCTCCAAGGAACGAGCAGCCCAGAGCAAAATCCTGGACCTTGAGACCCAGCTGAGTAGGACCAAGACAGAACTTGGCCAGCTACGCCGGACTCGTGATGATGTGAGTTGGGCCAGTGGGCAGCGCTTTCTCGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=0.109 C2=0.762
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(19.1=100)
A:
PF103944=Hat1_N=FE(31.2=100)
C2:
PF103944=Hat1_N=FE(23.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACATCAGGGGGACAAG
R:
CACTGGCCCAACTCACATCAT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]