HsaEX6063239 @ hg38
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128496041-128499126:+
Coord C1 exon
chr9:128496041-128496141
Coord A exon
chr9:128498413-128498575
Coord C2 exon
chr9:128499001-128499126
Length
163 bp
Sequences
Splice sites
3' ss Seq
GATTGAGTGCTTTCACCTAGGAA
3' ss Score
4.41
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATCGAACACCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAGCTGAGTCTGAAGGTGGATGAACTGGAGAG
Seq A exon
GAAACTGGAGGCGACCAGTGCCCAGAATATCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGTCCCAGCTGCGGCTGGAGGAGAAAACACGGGAATGTGGGACCCTGGCAAGGCAGTTGGAGAGTGCCATTGAAGATGCGAGGAGGCAG
Seq C2 exon
GTGGAACAAACCAAGGAGCACGCACTCTCCAAGGAGCGAGCAGCCCAGAACAAAATCCTGGACCTTGAGACCCAGCTGAGCAGAACCAAAACGGAATTGAGCCAGCTGCGGCGGAGCCGTGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-'66-61,'66-59,69-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=0.179 C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACACCAGGGGGACAAG
R:
GCAGCTGGCTCAATTCCGTTT
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains