MmuEX6100115 @ mm9
Exon Skipping
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29779059-29782349:+
Coord C1 exon
chr2:29779059-29779159
Coord A exon
chr2:29781460-29781622
Coord C2 exon
chr2:29782224-29782349
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATGGAGTGCTCTCACCTAGGAA
3' ss Score
3.71
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATCGAACATCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAGCTGAGTCAGAAGGTGGATGAACTTGAGAG
Seq A exon
GAAACTGGAGGCTACCAGCGCCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGGCTCAGCTGCGGTTGGAGGAGAAAACGAGGGAGTGTGGGTCATTGGCGAGGCAGTTGGAGAGTGCCATTGAAGATGCCAGGCGACAG
Seq C2 exon
GTGGAGCAAACCAAGGAACAGGCACTCTCCAAGGAACGAGCAGCCCAGAGCAAAATCCTGGACCTTGAGACTCAGCTGAGCAGGACCAAGACAGAACTTGGCCAGCTGCGGCGGACTCGTGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-'39-47,'39-46,43-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.182 C2=0.762
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(17.7=100)
A:
PF103944=Hat1_N=FE(29.0=100)
C2:
PF103944=Hat1_N=FE(22.0=100),PF087025=Fib_alpha=PU(12.7=19.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACATCAGGGGGACAAG
R:
ATCATCACGAGTCCGCCGC
Band lengths:
227-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: