DreEX6083462 @ danRer10
Exon Skipping
Gene
ENSDARG00000028900 | odf2a
Description
outer dense fiber of sperm tails 2a [Source:ZFIN;Acc:ZDB-GENE-091117-46]
Coordinates
chr21:13047864-13048983:+
Coord C1 exon
chr21:13047864-13047964
Coord A exon
chr21:13048167-13048329
Coord C2 exon
chr21:13048858-13048983
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTTGCTCTTTTCAGGAA
3' ss Score
10.19
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCAGAGCAACAGGGAAGCTTGGCGGAGATGTTGAGGCACAAAAACATGCTGCTACAGGAGGAAAACAAACAGCTTCAGCACAAAATGGAGAGCCTTGAACG
Seq A exon
GAAGCAAGAGGAGGCTAACTCGCAAAATCGAGATCTCATCCAGGTCATTTCAAAACGGGAAGAGACGATTCATAGCAGCCAGGTGCGTCTGGAAGAAAAGTCTCGAGAGTGCAGTATTCTGACCAAACAGCTGGAGGAGGCATTGGATGATGCCCGTCGACAG
Seq C2 exon
GTTACCCAGACCAGAGAGCGAGCAGCTTCTAAAGAGCGCGTTACGCAGTCCAAGATTGTCGATTTGGAAGCTCAACTGAGCAGAACATCAACTGAGCTGAACCAGTTACGACGAGCCAAAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028900-'23-27,'23-25,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.527 C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAACAGGGAAGCTTGG
R:
CTCATCTTTGGCTCGTCGTAACT
Band lengths:
226-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]