BtaEX0025321 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57851776-57854549:+
Coord C1 exon
chr3:57851776-57851861
Coord A exon
chr3:57851944-57852106
Coord C2 exon
chr3:57854424-57854549
Length
163 bp
Sequences
Splice sites
3' ss Seq
TATATGTCTTCTGTAAAAAGAAA
3' ss Score
3.44
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTTGACGAAAATCATAGTCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAATTATCTTATTCAGTTAAAGTGTGAAAACCTTAAACA
Seq A exon
AAAATTAGAACAGATGGATGCAGAAAATAGAGAGCTTGAAAAGAAGCTGGCAAACCAAGAAGAATGTCTTAAGCACAGCAATCTTAAATTTAAAGAGAAATCTGCAGAATATACAGCACTGGCCAGACAGCTGGAAGCTGCTTTAGAAGAAGGAAGACAAAAG
Seq C2 exon
GTTTCTGAAGAAATAGAGAAAATGTCATCTAGAGAAAGGGCTTTACAAGTCAAAATAGTAGATCTGGAAAATGAGCTTAGAAAGAAAAATGAAGAACAAAATCAACTTGTTTGCAAAATGAACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.236 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAAAATCATAGTCTTCTGACA
R:
GCTGTTCATTTTGCAAACAAGTTGA
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development