MmuEX6074539 @ mm10
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145148531-145151085:+
Coord C1 exon
chr3:145148531-145148616
Coord A exon
chr3:145148915-145149077
Coord C2 exon
chr3:145150960-145151085
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTATGTGATATAAAGGAA
3' ss Score
3.33
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTTGATGGAAACCAAAGCCTTCTGACCAAGCTTTCTCTTGAGGAAGAAAATCATCTCATTCAGTTAAAGTGTGAGAACCTTAAAGA
Seq A exon
GAAACTAGAGCAGATGGATGCAGAGAATAAAGAGCTTGAGAAGAAGCTGGCCGACCAAGAGGAGTGTCTCAAGCACAGTGACCTGGAGCTGAAAGAGAAGGCTGCAGAGTACACAGCCCTGTCCAGGCAACTGGAAGCCGCTTTGGAAGAAGGAAGACAAAAG
Seq C2 exon
GTTTCAGAAGAAGTAGAGAAAATGTCATCTAGAGAGAGGGCTTTACAAATTAAAATATTAGATCTGGAAGCTGAGCTTAGAAAGAAAAATGAAGAACAAAACCAACTTGTTGACAAGATGAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-'50-36,'50-33,52-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.271 C2=0.381
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGAAACCAAAGCCTTCTGA
R:
CTTGTCAACAAGTTGGTTTTGTTCT
Band lengths:
202-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types