HsaINT0117839 @ hg38
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86354530-86354859:-
Coord C1 exon
chr1:86354774-86354859
Coord A exon
chr1:86354693-86354773
Coord C2 exon
chr1:86354530-86354692
Length
81 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TATATGTTTTCTGTAAAAAGAAA
3' ss Score
3.35
Exon sequences
Seq C1 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
Seq A exon
GTAAGTATTAAATTACTTAACATTGCTGCTGCATATTTCTCTGCACATTAACATTTTAAAATATATGTTTTCTGTAAAAAG
Seq C2 exon
AAAATTAGAACAGATGGACGCAGAAAATAAAGAGCTTGAGAAGAAGCTGGCAAACCAAGAAGAATGTCTTAAGCACAGCAATCTTAAGTTTAAAGAGAAATCTGCAGAGTATACAGCATTGGCCAGACAACTGGAAGCTGCTTTAGAAGAAGGAAGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417:ENST00000359242:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.156
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(9.8=100),PF131661=AAA_13=PD(5.4=37.9),PF059116=DUF869=FE(14.1=100)
A:
NA
C2:
PF0003816=Filament=PD(1.0=5.5),PF059116=DUF869=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGAAGTGTGAAAACCTTCA
R:
AAAGCAGCTTCCAGTTGTCTG
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development