BtaINT0105380 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57839045-57846131:+
Coord C1 exon
chr3:57839045-57839180
Coord A exon
chr3:57839181-57846020
Coord C2 exon
chr3:57846021-57846131
Length
6840 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
ATTTATATATTCCTTAATAGACT
3' ss Score
6.43
Exon sequences
Seq C1 exon
GCAAATCATTAATCTTTTGGAAGATCTGAAGAAAATGGAAGAGCATGGAAAAATTTCATGTGAAGAAATTCTTAGAAAACTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAATTAAAG
Seq A exon
GTATTATGTGTTTGTGTGTATGTATATCATGTTGTATAATGACAACTTAGTCCTTTGTAGAAGTAGCTTGAAGTAACAACATTTTTAGAAGTAAAGTTGTATCATTTATCTTTTATGTTTCTCAGAGTTTTAGAATATCATTATAATAAGCAATTCTAAAACTATATCTTTGTATCTTTACATACATATATATGGACAGTACTTATATATTTGAATGTTTACAGTTGTATACACAGATACATGTAAAAATTGTTTTCAGTAGTACTGAATAACATTTATGAAGCTGAATAACTATCTCTTTGTCTCAACCTAAGAGAATTTATTTATTCTCCAAAAATACATTAACTTTAACGCATAAGATTATTTCTAGGTGTCATGGTTATGGTAGGATATAGCCTCAGGCTTGGTCCATTTGAAACCAGAAAGTATATTTTTGGCTGCTTCATAACTGGAAAGAATTTTCCAACTTAATCAAATCTGAGGGACAATTGAGTTTTTATGTACCAGAGAAAAGATGTAGAAGATTTTATACTTCCTGAGAAAAAGGATATTTGAGTTCCCACTCATAGATATGTATAAGCTGATGAGACCTGACTAAAGAGGATGACATCATTTTCAGTTCCTTAATACTGTTTTTGGAGAACAGTAAATAGAAGACAGAAAAAAATCTGTTTATGGGGAAAAAAAGGCAAAAATTGGCAGTTCAAAACCTGAGTGGCATCAGAGAACTGAGCTACTTTTAGGCTCTCTACCCTGCCATTCAAATGGGTGATGGGGCTCCATCCATTATATTTCCAAGATTCAAACAACAGGATGGAGGGAAACAAAAGATGAATTCTCTCTCCCCTTTTCCCCATTTCCTCCTCTTTATGGAGACTTCCTGAAAGTTCCATACCATTTGATTCGTCTCCTTATTTAGGTATTAATATATGGCTTCCTCTGGGCTTCCCTGGTGGCTCAGAGGTTAAAACGTCTGCCTGCAATGTGGGAGACCCGGGTTCGATCCCTGAGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCCTGGAGAATCCCATGGAGGGAGGAGCCTGGTAGGCTACAGTCCATGAGGTCGTAAAGAGTGGGACACGACTGAGCTACTTCACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCTCTCAGTCATGTCCAACTCTTAGCGACCTCATGGACTGCAGCCTGCCAGGTTCCTCCCTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCCTTGCCTTCTCCAAGTGATCCTGAGCTCTAGCCAAATATGAATACTCCTTATTTCCTGCAGTTTGTTCATATTTTCCTCTATCCCTATAGTCTTACTATTTTTACAGTTTGGAATTTTTTTTCTCAAGTATTTAAATCCTACCTTTTCTTTAAAGTTCAGTTTAAATGCTCCTTCCTCCCAAAGTCTCCTCAATTAGGATAAATCTTTCCTCACAAACTCCCATCTTTTATGCAGAGGATGCCTAGGGGAGGTGTGACATATAGTTAGTTCTCATTCAATATTTATTGAACAGTTCTTTTTTTTCCTATTATTTTGATTGGAAGATAATTACTTTACAATATTGTGATGGATTTTGCCGTACATCAACATGAATCAGCCACAGGTATACATGTGTCCCCCTATCCAGAATCCCCTTTGCACCTCTCTTCCCAACCCTCTGGGTTGTCCCAGAACACCAGCTTTGGGTGCCCTGCTTCATGCCTTGAACTTGCACTGGTCATCTGTTTTACATATGGTAATGTATTTGCATGTTTCAGTGGTATTCTCTCAAATCATCCCACCCTTGCCTTCTCCCACTGAGTCCAAAATTCTGTTCTTTACATCTGTGTCTTCTTTGCTGCCATTCAGGTAGGATCATTGGTACCATCTTTCTAAATTCTATATACATGTGTTAATATACGTATTTGCGTGTTAGTATAATTTGTCTTTCTCTTTCTGACTTGCTTCACTCTGTATAATAGGCTCTAGTTCATCCAGGTTCCTCATTAGAACTGACTCAAATACGTTCCTTTTTATAGCTGAGTAATATTCCATTGTGTATATGTACCACAACTTCCTTATCCATTCATCTACCAATGGACATCTAGGTTGCTTCCATATCCTAGCTATTGTAAATAGTGCTGCAGTGAACATTGGGGTACTGAGATGTGTCTGAAATGTGTCTCTTTCAGTTCTTGTTTCCTCTGGGTGTATGCCTAGCAGTGGAATTGCTGGGTTGTATGCCAGTTCTGTTTGCAATTTTTTAAGAAATCTCCACACTGTTCTCCATAGTGGCTGTACTAGTTTACATTCCCACCAACAGTGAAAGAGGGTTCACTTTTCTCTACAACCTCTCCAGCATTTATTGTTTGTGAACTTTTTGATGATTCAATTCTGACCGGCATGAGATGATACCTCATTGTGGTTTTAATTTGCATTTTTCTAATAATGAGTGAAGTTGAGCATCTTTTCTTAGGTTTATTAATCATCTGTATGTCTTCTTTAGAGAAATGTTTATTTAGGTTTTTTGCCCATTTTTTTGATTGGGTTGTTCATTTTTCTGGTATTGAGCTGTATGAATTGCTTGTATATTTTGGAGATTAATTCTTTGTCAGTTGTTTTGTTTGCTATTATTTCTCCCATTCTGAGGGCTGTCTTTTCACCTTGCTTATAGTTTCATTTGTTGTGCAAAAGCTTTTAAGTTTAATTAGGTCCCATTTGTTTATTTTTGTTTTTATTTCCATTACTCTGGGAGGTGGGTTATAGTGGTTCTTGCTGAGATTTATGTCGGAGAGTGTTGTGCCTATGTTTTCCTCTAAGAGTTTTGTAGTCTCTGGTCTTACATTTAGGTCTTTAACCCATTTTGAATGTATTTTTGTGTACGGTGTTAGAAAGTGTTCTAGTCTCATTCTTTTGTAGGTATGTCAGTTCAGTCACTCAGTTGTGTCCGACTCCCTGTGACCCCATGAATTGCAGTACGCCAGGCCTCCCTGTCCCTCACCAACTCCCAGAGTTCACTCAAACTCACGTCCATCGAGTCGATGATGCCATCTAGCCATCTCATCCTCTGTCCTCCCCTTTTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCCTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAACACCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTTAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGTGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCCATAGCCTTGACTAGACGGACCTTTGTTGGAAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCCTCCAAGGAGTAAGCGTCTTTTAATTTCATGACTGCAGTCACCATCTGCACTGATTTTGGAGCCCAAAAAAATAAAGTCTGACACTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTTGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCGCTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATATAGCCTTGATGTATCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCTTGACCTGCATACAGATTTCTCAAGAGGCAGGTGAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCAGATGTTGGCCATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCACGATTCACATATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATCACTTTACTAGTGTGTGAGATGAGTGCAATTGTGCGGTAGTTTGAGCATTCTTTGTCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCGTATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGGAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTTGTAGTGATGCTTTCTAAGGCCCACTTTACTTCACATTCCAGGATGTCTGGCTCTCGGTCGGTAATAGTAGAGTAGTTCCTATAAAAATGTAAGTCATCTTCAGACCATGCCACTGCTTTTGGTTAATAGAGTAAACATCTACAAGGCATTATACTATCTGACCTCTGACATTGCCTCTCTGACCTTATCTTCTTCCACACTTCCCTTTTTCTTGCTTTCTGCTACATTGGCTTTCTTTCTGTTTTCCTCTAACTGACCAGGTTTTCTCCCACTATGGCCTCTTCCCTCAAAGGGCAGCACATCCTTTTGGTGTTTACTCCAGAGTCTCTTTTTCAGGAGGCCTTCCTGGTAGCCCATTCTCATCTTGTCCTTACTATCTTGCTATCATGTATGATATATCTTTCATCTTGTTCTTGTTTTCTTTGTCTGTATACTCCTTGTTTTTGTCTGTCTATACATGGAGTACATTAAGCTCATGATGGAAGGGGTTTTTGCTTTTTATGTTCACTACTAAAAGACTATATCCAGTGCTTAGGGCATTTGTAATAACTGGTCAGGATATTTTTTTCATGTATTTTTCATCATTTACATTTCTGCCTTTTGGAATTACCTACTAATTATCCTTTACATGTCTTTTTTTTTTTTCAAAATTATTATATAAGGGTTCTCTCTATATTAGGATATTAATCTTTTGTCATAATCCTTTACTTTATTGCACATTTTGTTAGCCTGTTTAATACTTTGAGGGGCTCTGAAATTTTGGAGATACACATGAACCTATGTATGTATATGTGTATGTGTGTGTATGTATATAATATATATATATATATATATATATATTTTTTTTTTTTTTTTCCCTTTATGGCTTCCTTTTGGAGTCTCTCACATTTCTGCACATCTTGGGAGCAACATACTAACTATGATCCAGAAACAGACTTATCTTTTCAAGGATGTTTGTATAGCGAACATCCTTGGAAGATAGTAGTGTTTCCTTCTACCAAAAGGCATGCTTACTGCCTGTTATAAAAGATTTGGGTTCCCTAAATTTGGAGTTGCTTCTCTGTGTGTCTCCCATTGTGTACAGGTGTCATCGGCCCTCTTGGTATTGCTTTGGAGGAAGTGAGGCTTAGGAAACTAACACAAACACTGATATAAGACTCACCCAGGAGTCTTGTGTCTTCTGCTAGTATCCATGAGACTATGCTAGGCTAACTGGTAGTCTTGGAGGGTAAAAATTTCAGACTCTTACAGTTCTTGATATCGTCTTTTGATTTTATGCTTAGTTAGGTTTTTACTATTCTAAAATTAAATCAGATTTTACCTGAATCTTCTGTGAAAAAAAGTGTAAGCTTAATTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAACAGCATACATTTTAATATGTAATAAGTACTGAGATTCTCTACTTAGTATCCTTTAAAATTTTTATTAGTCTCTTCTATTTTTCCACATGAATTTTAAGTTAATTTTCTCATATTCCTCTTCCCCTCAACTGTTTTGGTTGTAATTATAATAAAGTTGTATTGATTTGTAAAAAACTGATATGTCAATAGTATTGAGTCTCCCTTCCAGGAATGTGGGCTTTCTATTGTTCAAGTCTTTTATGTCAATAAATTTTTAAAGTTTAAAAATATGTTTTTAATAAATAACTTTTTGAAATTCTTAATTTTAATGGTAATTATATGCAGTCAGAAATAAGTTAATTTTATTAGCTTTGTTGATAAATGAATTAATTTTTAATGCATCAAAGTACAAATGAATTCTAATGATTTATAAAATCTATTTATATATTCCTTAATAG
Seq C2 exon
ACTACACTTGCTACTTTGAAGGATGAGATTGCCTCTGTTGAAAATGAACTCTTAGAATTGCAAGAAGTAGAAAAACAACAGAAAACCCTTATTGAAGTTTATAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907:ENSBTAT00000017157:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF115593=ADIP=FE(34.9=100)
A:
NA
C2:
PF115593=ADIP=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]