RnoINT0105060 @ rn6
Intron Retention
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251018657-251020667:+
Coord C1 exon
chr2:251018657-251018792
Coord A exon
chr2:251018793-251020556
Coord C2 exon
chr2:251020557-251020667
Length
1764 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
AGTCACGTATTTCTTTCTAGAGT
3' ss Score
6.35
Exon sequences
Seq C1 exon
GCAAATCTCTCATCTTCTGGAAGACTTGAGGAAAATGGAAACTCATGGGAAAAATTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCTTAAATATTGAGAATGTGAAATTAAAG
Seq A exon
GTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTCAGAGGACCTTGTGGAAATCCTCATGATACTGTATTATTAATGTGAAAAATCCCTAGATCTGTCAAGTGTAAGAAGTATGCATATATTTATGTTCCTCTATGTCAGTTTTAAGATTTTCAGTTATGTCCAAAAAGAAGTTTAAATTTCATTTAGCAGGACAACACTTATGACCTTGAACAACTCTCTCTTTGTCTCAATCTTAAAACAGTTTATTTACTCTCTAATTTTAGCAGTGAATCATCCAAAATTGTATTAGCTTTACTGCACAAAAGTATTGGTAAGTGTCATGGTTACCATATGATACAACATCAGACTGGGTCTGCTTGAAACCAGAAAGTATGTTCTTGGCTCCTTTATAACCAGACCGAATTTCCAACTGAGTCAAGTCCAAGGAGTAATTGGTTTATATGTGTCCCAGAGAAGAGAGGGGGAGGAAGATTTTAGAGTTTCTGAGAAAAAAGAAACCCAAGTTCTTTGACAACAGACTTGCCTGTGGCTGAACACAAAACTTAGCAAAGAAGCACTTGGACCATGAAATACATAATCACAAAATTCTCCCAGATTCATGTTCTTGAAACAGAAATAAAGGTTTAGGGAAAGTAGAAAGGATTTGGATGTAACCTTAAAAAAGAGAAAATAGGAAGGAATGTTTTATGTGTGCTCCGTAAGTAGTAGGTCAGAGGACCTTGTGGAAATCCTCATGATACTGTATTATTAATGTGAAAAATCCCTAGATCTGTCAAGTGTAAGAAGTATGCATATATTTATGTTCCTCTATGTCAGTTTTAAGATTTTCAGTTATGTCCAAAAAGAAGTTTAAATTTCATTTAGCAGGACAACACTTATGACCTTGAACAACTCTCTCTTTGTCTCAATCTTAAAACAGTTTATTTACTCTCTAATTTTAGCAGTGAATCATCCAAAATTGTATTAGCTTTACTGCACAAAAGTATTGGTAAGTGTCATGGTTACCATATGATACAACATCAGACTGGGTCTGCTTGAAACCAGAAAGTATGTTCTTGGCTCCTTTATAACCAGACCGAATTTCCAACTGAGTCAAGTCCAAGGAGTAATTGGTTTATATGTGTCCCAGAGAAGAGAGGGGGAGGAAGATTTTAGAGTTTCTGAGAAAAAAGAAACCCAAGTTCTTTGACAACAGACTTGCCTGTGGCTGAACACAAAACTTAGCAAAGAAGCACTTGGACCATGAAATACATAATCACAAAATTCTCCCAGATTCATGTTCTTGAAACAGAAATAAAGGTTTAGGGAAAGTAGAAAGGATTTGGATGTAACCTTAAAAAAGAGAAAATAGGAAGGAATGTTTTATGTGTGCTCCGTAAGTAGGGGGTTTACAGTCACGGGCCACTTTGCCCTGCTGCCATCTGAGTTCTGAGTTAATTTTATCATATCCCTCAGCTCTTACACTTTGGTGGAGATTGAAAAGTGTAATGAATGTAGAAAACGTGACGTGTCAGCGTCGCCCATTCTTAGTTAGAACTCAGCTCTCCTTTTGTCAGTGATTAAAACCCTGTCTGGTGTACTGACTAGATTTGTTCATGAGTATTAGTCATTAATTTAAGATGGCAATTATATGTCCTCAAATATTTACTCCACTGCTGTTGATGAATGAGTTATGCTTTAGTAATTCTTCAGCTTGGACTGAAGTGTTCTGACAGGCAGAAACCCCATCAGTCACGTATTTCTTTCTAG
Seq C2 exon
AGTACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTTCAAGAAGTAGAAAAACGACAGAAAGCCCTCGTTGAAGGATACAGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059:ENSRNOT00000018905:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(25.8=67.4),PF115593=ADIP=PU(30.5=69.6),PF0017016=bZIP_1=PU(53.7=47.8)
A:
NA
C2:
PF0003816=Filament=FE(12.5=100),PF115593=ADIP=FE(35.0=100),PF0017016=bZIP_1=PD(41.5=45.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATCTCTCATCTTCTGGAAG
R:
TGAGTTCTGTATCCTTCAACGAGG
Band lengths:
246-2010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]