MmuINT0112719 @ mm9
Intron Retention
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144799552-144802858:+
Coord C1 exon
chr3:144799552-144799687
Coord A exon
chr3:144799688-144802747
Coord C2 exon
chr3:144802748-144802858
Length
3060 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
AGGCACGTGTTTCTTTCTAGGGT
3' ss Score
7.82
Exon sequences
Seq C1 exon
GCAAATCGCTAACCTTTTGGAAGACTTGAGAAAAATGGAAACTCATGGGAAAAACTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCCTAAATATTGAGAATGTGAAATTAAAG
Seq A exon
GTAGCAAGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCATGCGCGCGCGCACTTAGCAGCAAAGTTGTGGAGTGTTGGCTAATGCTCTGCATCTCGTGTCTCTCATCTTCCTCATGATATTGTATTATGAAGGTAAATAATTTCTGGATCTGTCAAGTGTATAAAGTATGTATCTGTGCTTATATTTATGTTTATCTATTTAAGTTTTAAGATTTTTAATTACATGTACAAAAAGAAGTTTAAATTTCACTTAGCAGGACAAGCTTGTAAGGCTGCACAACTTTCTCTTTGTGTCAACTTTCCAACAGCTTATTTACTTTCTAATTCCAGCAGTGGATCATCCAAAATTGCATTAGCTTTACTGCACAAAAGTTTTTGTAGGTGTCATGGTTACCATATGATACAACATCAGACTGGATCTGTGTGAAACCAGAAAGTGTGTTCTTGGCTCCTTTATAACCAGAAAGAATTTCCAACTGAGTCAAGTCTGAGGAGTAATTGGTTTATATGTGTCCCAGAGAAGAGATGGGGGAGGAAAACTTTAGACTTTCTGAAAAAAAAAAAAAAAAAGAAACCTGAGTTCTTAGACATCAGACTTGCCTGTGGCTGAACATGAGGGTGCCATTCTCAGCTCCACAAAGCAAAAATTAGAAAAGAAGTGCTTGTACCATGAAATACGTAATCGCAGAGTTCTCCCAGATTCATGTCCTTGGAAGAGAAATAACGGTTTAGGAAAAGTAGCAAGGATTTGGATGTAACTCCCTTCTCCATCCCTCCCCTAAGGAGAGAACTTCAGCAATTATGAAATTCAAAGTCCGGAATCCCATCATTTTTCTAAAGATCCCTTTCTTTGGTAACAATAGTTAAATTGTATATATCTTCCTCAGTAGTCAATCACTGAAAAGTCCATTCCAATTTCTCCTAACGTGTGAGTAGTTTAAACATCTAGTAATCATAATTATTTCAAGAAAAGGAAGCAAGTGAGCTTCTAATGCCAAGAAAAGAAAGTGTTTCATTCCTTAAAGGATGAAGGTTCCAGAAGTTCTACTTCATATTTATGTTTCTGGAAACCCATTTTCCACTCTTGTCATTGTGGGAGCTCCTCTGTATCCCTGGCTAGCCTCACTGGGCTGTTCTCCAGGTGTCCTGCTGGAGTGTCATGGCTGCTGCCCCATCTCCTGGAGCCTGTGTTGCATAGCTTAGTTCCCCTTATTTTGTTAGGCTATGTCTTCAAAATATTGTTTTAACCTTAAAAAACAGAAATTAGGAAGAAGTACATATGAAGGATTTTATGTGTGCATCTGAAAATACCTTTATTCTGCCTTCATTTTGACTTCAAGTAGATACAGCATTCCAGCATTCTTTGCTTGACTGTCTCTTGCAATTGAAGGTAACAGAAAGCAATCTCTTGCCAGTCCGATTCTTAGACTGTGGAAATGGTACTTCAAATTTATGCTGAATTCCCAAAATATTCCTTTATCGTTGCCGTGTTAACATTTCATATAGGTCTGCTGACTTGGTGTGTTTGGGGAAATGCTTTCTCCTTTCTTTTTCCATTTTCTTGGGACTGTGCTAATGCGTCATTGACTTAGACTGAAGCCTGTTTTCAGTCTCTGCTTTTGGTCAGCTTTGGGGGATAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTGTTTTTGTTTTTTATACAGCCCAGGACCACTTGCCTGGGGAATGCGCTGCCTACAGTATGAGCTGGGCCTGGCCCTCCTTCATCAGTTAATCATGATTCTCCCTCACAGGTATCCCCACAGGCTAGCCTGATAGGCGGTTTTGCAGTTGACTGTAGACTGTGTTGACAGTAAAGGCTAATGAGGACAACTTCGTTAGAAGATACCCATAGTTTCCTTTCCTGCTCTCTGGCTGTTATGAGACACTTGAATTTTATACTCAGCTTTGCCGTCTTTTGATACATCCCAGCTCCTCTGGGGCTTACCCCATTGGACATGCACCTCAGGAAATTGACACCATGCCTATTGTTTTGCTGCTACTGCTGAGAGTAATAATGTCCTCTGCTTCTGACCCTCTATGTGCCTTCTGCTGGCATCTATGAAATTTTGGTAGGCCAACTGGTATATGCCCAAGGAGACTATTCTTGTAAGTCTTAGCATTTCAGTAGACTTTGTGCTGCTCTAAAATTCTCATATAGTTGTCTTCTGGATCCCCTTCATATTTTTATAATAAAAACATTTATTTAATGTCCCTTCAGCAGTGAGCTGAGGCAGGTAGTTAACCTGTTTCCCAAGTAGTTGCAGTTTATTCAAGCTTTGTTTACTTATAGCCTGTGTTTTCCTTAGTGGTTTAAAACCCAAAGTTGACCATATTTTACATTTCTGTGTATTTTTCTTTTTCTGCTATCTTCTATGTTCATAGTATCTTGACAGCTTACTTGCTTATACATTTCAGTATCTAATAGGTATGGTTACTGTCCACTTAGTATCGTCTATGTATTGTTTGCTCTTCCTATTTAGTCACTCATATGAGGTGTCTTTATTCCCAGGTTTACTTTGATACTGATTTTATTAAGTAGCCCCAGCTGGTCTAAACCTTGCAACAGTCCCCTGCCTGGCTCTGTAAGCATGGGGTTTATAGTCATGGGCCACTTTGCCCTGCTGCCAACTGAGATTTGAGTTAGTTTTGTCATATTCCTTTCAACTGTTATACTTTTGGTGGAGATTGAGAAGTGTTAAATGAATGTAGAAAACTTGGAATGTCAACATTATCAATTCTTCTTGTTTAGAACACAACTTGTTTTCAGCTCTTTTTATTTGTCAGTAAAAAAAAAAATCCTGTCCTGTGTACTGATTAAATTTACATGAGTATTACTCATTAATTTTAGATGGGAATTATATGCAATCAAATGATTACTCCATTGCTGTTGATGAATGAGTTATGATTTAATGATTCTTCAGCTAGGACTGCAATGCTCTGATGGTTAGGAACTCCATCAGGCACGTGTTTCTTTCTAG
Seq C2 exon
GGTACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTGCAAGAAGTAGAAAAACGACAAAAAACCCTCGTCGAAGGATACAGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-Odf2l:NM_001162538:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF074396=DUF1515=FE(57.0=100),PF115593=ADIP=FE(32.8=100)
A:
NA
C2:
PF074396=DUF1515=PD(22.8=48.6),PF115593=ADIP=FE(26.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: