BtaINT0105897 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020332 | OSBP
Description
oxysterol-binding protein 1 [Source:RefSeq peptide;Acc:NP_001192899]
Coordinates
chr15:84122665-84123294:-
Coord C1 exon
chr15:84123049-84123294
Coord A exon
chr15:84122786-84123048
Coord C2 exon
chr15:84122665-84122785
Length
263 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
GCGCTCCCGGTCTCTTCCAGGTG
3' ss Score
10.47
Exon sequences
Seq C1 exon
GTGAACTTTAACGAGCCCTTGTCCATGCTTCAGCGCCTCACTGAAGACCTGGAGTACCACGAGCTGTTGGACCGGGCCGCCACGTGCGAGAACTCTCTAGAACAGCTCTGTTATGTTGCAGCTTTCACCGTGTCCTCCTACTCCACCACTGTCTTCCGCACCAGCAAGCCGTTCAACCCACTCCTCGGGGAGACCTTTGAGCTGGACCGGTTAGAGGAGAATGGCTACCGATCCCTCTGTGAGCAG
Seq A exon
GTGAAGGAGCCTCAGGACTGTAGCACGCTTCCTGTTGCAGGAAGGGGGGGTTCGGGGGGTTGCTCCCCAACCTGGGTGTTAGTATTTGCAGAAATTCCAAGCCCCTCACCCCAGACTGCCTTCCTTTCCTTCAGGACTTCAGCCCTGGAGGCCCCGGTGTTCACCTCCTGCTGTGGGCGTGCGACGTCCAGCGGGAATCTGGGGCGTGACTAGGCAGCATCTCTCCTGACTGCCTGTTCATTTGCGCTCCCGGTCTCTTCCAG
Seq C2 exon
GTGAGCCACCATCCGCCCGCGGCTGCACACCATGCCGAGTCCAGAAACGGCTGGACGCTGCGGCAGGAGATCAAGATTACCAGCAAGTTTCGCGGCAAATACCTCTCCATTATGCCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020332:ENSBTAT00000027095:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTACCACGAGCTGTTG
R:
GGAGAGGTATTTGCCGCGAAA
Band lengths:
306-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development