MmuINT0113584 @ mm9
Intron Retention
Gene
ENSMUSG00000024687 | Osbp
Description
oxysterol binding protein [Source:MGI Symbol;Acc:MGI:97447]
Coordinates
chr19:12058394-12059002:+
Coord C1 exon
chr19:12058394-12058639
Coord A exon
chr19:12058640-12058881
Coord C2 exon
chr19:12058882-12059002
Length
242 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCACACCTGATCTCTTAAAGGTG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG
Seq A exon
GTAAAGACCCCAAGCTGGTAACATTTTCCCTTCTTACCACAGGCTAGTTTTTGAGAAGCCAGTCTCTAGTCAGCCTAGTCTGTCTTCTTTTTCATCAGGGTTCAGTACACTAGCCTGTTACTCACCTGCTGTTGTGGATGTAAAAATATCAAGGGAGGCTCTTGGGTGTTTATCGCCAGCTAACAGGCTCTAGCGTACTCTTCTCCACTCTTCTTTGTTAACTCACACCTGATCTCTTAAAG
Seq C2 exon
GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024687-Osbp:NM_001033174:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTTGTCCATGCTTCAG
R:
GACGCAATGTCCAGCCATTTT
Band lengths:
298-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: