RnoINT0105686 @ rn6
Intron Retention
Gene
ENSRNOG00000021057 | Osbp
Description
oxysterol binding protein [Source:RGD Symbol;Acc:1308069]
Coordinates
chr1:228412855-228413464:+
Coord C1 exon
chr1:228412855-228413100
Coord A exon
chr1:228413101-228413343
Coord C2 exon
chr1:228413344-228413464
Length
243 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCACACCTAATTTCTTAAAGGTG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAATACCATGAGCTGTTAGACCGAGCTGCCAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTGGCAGCCTTCACCGTTTCCTCCTATTCCACTACTGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTAGACCGACTGGAGGAGAATGGGTATCGATCCCTCTGTGAGCAG
Seq A exon
GTAAAGAGCCCAAACTGGAGACACTTTTCCCTCTTACGACAGGCTAGTTTTTGAGAATCCAGTTCCTTATCAGCCCAGTCTGTCTTCTTTTTCTTCAAGGTTCAATATACTAGGCCTGTTATTCACCTGCTGTTGTGGATGTAAAAGTATCAAGGGAGACTCTTGGGTGTTTACCTCCAATTAATAGGCTCTAGCTTTCTCTTCTCTACTCTTCTTGGTTAACTCACACCTAATTTCTTAAAG
Seq C2 exon
GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021057:ENSRNOT00000065411:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTTGTCCATGCTTCAG
R:
GACGCAATGTCCAGCCATTTT
Band lengths:
298-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]