BtaINT0105970 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71484775-71486730:+
Coord C1 exon
chr4:71484775-71484901
Coord A exon
chr4:71484902-71486568
Coord C2 exon
chr4:71486569-71486730
Length
1667 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTTTCCCTTAATGTCTCAGGTT
3' ss Score
9.35
Exon sequences
Seq C1 exon
ATCCCATGCCAAAAGGCTATGAGCAATATTATGGCTTCACACAGTTTGCACTAGAATTAAATGAAATGGATCCATTGTTAAAGTCTTTATTACCACCTACCGATACTCGATTCAGGCCAGATCAAAG
Seq A exon
GTAAGGATATTTTTCAGGTCTTTATCCTCCAGAGATGTGAAACTATAAAAAGGCTTAGTAACATCTTCTAGGCCACCAATGGAGCCTAAAAGAGAGAGATTCTGTCATCAAGAGTAGAAGTCTAGGGGGACTGTAAGCAACCTTGTGGAAGGAGCAGAGCCCAGCTTAAAGCAGTGTGTGGCATGACCTTTATTCACCAGTAGATTCCCGTTTCTATTGAAATAAATTTTTCAAAAGTTTTTTTAAAAGAGTGTTCTTACATATAGTAATAAAAAATACACTTACTATGTATTTGAAAGAATAAAAGCATTCAGTTCCTTGGCCCTTGAATTTAAACTATTTTGGTGCATTGAAATCTAACTTCTGATCCTAGGTTTGAGGCTGACAAGCTGTATGACATATGCTAAGTCTTTTAACCTTTCTCAGTCTCAGTTTCCAACTCTGTAAAATGGAAAGCATAATGTCTGCCCTAAGGCCTATCTCTTTAAGACTCAAAACCAAGGGGAAAAAAGAAAATTTCACTTTATTTTAAAAAACCCAGCATCCTTCTTCATGGTAAAATAAATAAAATGTATACCTAGAATCAACAGATTTATGACTGAGCAGCTTACTTCATGATTTGGTTCTAGAAATCAAGATCAATCCATTTGGGGAAAAAGACAAAAAATAGACATAGGAAAATGAACAGTTTACAAACAATGAAGTGCAGATATCTCCTAACTATATGAAATGATACTCAGTCTTGCTCAGAGAAATGTAAAAATGTAAAAACCATGCTGTTATACCATTTCTTTACCCATCAGATGGCAAAGACTTGAAGGTTTGATGTACTCTGAGGGTACAGGGAAGAGGCATTCCAGTACCACTGCTGGTGGGAATGTAAATTGCTAGAATCCCTGTAAAGGGCAGTTAGTAATAGACATATTGCAAACTCACCTTTTTACCCAGCAGTTCCAATTCTAGAATCATCTCCTTATACATAAACTAACACATGTGAAAAATGGCAATTGTACACAGTCCTTCACTGCAGCATTAATTATAACGTAAAAAAGATTGAGACCATCTCAAATATCTATCAGTGGAGAATTGTTTAAATAAATTCAGGTATACCCACATAACTGAATATTATATATCTATTAAAAAATCTAGAGATCTCTAAAAGAGATCTATGTACTACCAAGAACGATCTCCAAGATATATTGTTAAGTAAAACAAAGCAAGAAAAAAGAAACCAAACCAAGAAAGTATGCACAGTATGTGTAGCCTGCTTCCATTTCTGTTCTAAAAGGGAGGTGAGAATGTATGTTAATGTTTGTTTATATATGAATAAGAAATCTCTAGACGGATGCACAAGAAACTAGTCACGGTGGGCTACCCACGGTGGGTGGGGTAGGAAGGAAACAGGTAGAATTGAAGACAGGAACGAGAGGGAGATTTTGCCCCAAATTCCTTTTTATAGATATAATTTTTTGAACCATGTCTGTATCACCAGTTCATAGCACAGTGTCATCCCTCACTACTTCCAAGTGATGTTTAAGGGTTGGGACGTATCTTATTTTACAGGAGGATATTCTGAATGTCCAGTCTGTACATGTGCAGTTCTGGTAGTAATGATGGTTCCATTTTTTGGCATTTATATTCCTTCATCTTTTCCCTTAATGTCTCAG
Seq C2 exon
GTTTCTAGAAGAAGGGAACTTAGAAGAAGCTGAAATACAAAAGCAGAGGATTGAACAGCTGCAGAGAGAAAGGCGGCGGGTCTTGGAAGAAAATAAGGTGGAGCACCAGCCGAGGTTTTTCAGGTGTGTAAATGGTGGGGTCCTACGGGTCATTGTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342:ENSBTAT00000025767:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCCAAAAGGCTATGAGC
R:
CTGCCAACAATGACCCGTAG
Band lengths:
286-1953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]