GgaINT0097809 @ galGal4
Intron Retention
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31782101-31782911:-
Coord C1 exon
chr2:31782785-31782911
Coord A exon
chr2:31782224-31782784
Coord C2 exon
chr2:31782101-31782223
Length
561 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TATCACTGCTGGTGCTACAGGTT
3' ss Score
5.96
Exon sequences
Seq C1 exon
ATCCAATGCCTAAAGATTATGAACAGTGGTATGGATTTACTCAGTTCGCATTGGAGTTAAATGAACTGGACCTGCAAACGAGGTCATTGCTCCCATCCACCGACACACGCTTTAGACCAGACCAAAG
Seq A exon
GTAAGAAGTTTTCCCTCTTAAGTATATTCCTCAAAATCTCTACATTCACTTTATCCCTATGCTCAGGCTACTTTCTTTAGGTGCCTGCAGAATGTTCCCATTTCTACATTAATTCGGCATCTGAAACAGAATTTTAATCACTTATCAAGAGATGGTCTAGTCATTATAGACCAGTGTTTTCTGGAACTGGTTTTGGATGTTCTAGTTTCTAGATAACTGTCTTTACAAAGATCTTACAACTTTTCAGGGATTCTTTGTTGAGCATACTGTGTTCGAAGAGCTGAAACCTGAGACCCTTGAAACTTCTTTCTGTGTGGGGATCTTCTACCATTGCTAATTTCCAGGGAAAATAATCTAATACAAACGTTACTTTGAGCCTGTTGTAAGTTACCTTTCCATAAGTGCTTTTTGGTAATGCAATTATTGTCTATAGATACGGTTGTTTATCTTTCAAACACCAAGCTGTCTTCTGTAAGGATTAGATTCTGGAGTTCTGGAGGACCTAAGAAAAATAATGGACTGAAGCACCAACTGTGTCTTTTATCACTGCTGGTGCTACAG
Seq C2 exon
GTTTCTTGAAGAAGGAAATATTGAAGCAGCTGAAATGCAAAAACAGAGAATTGAGCAGCTACAGAGAGAACGACGGAAGGTGCTGGAAGAAAACAATCTAGAGCATCAGCCTAGATTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.1=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCTAAAGATTATGAACAGTGGT
R:
CTGAAAAATCTAGGCTGATGCTCT
Band lengths:
246-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]