RnoINT0105776 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80031721-80033847:-
Coord C1 exon
chr4:80033721-80033847
Coord A exon
chr4:80031844-80033720
Coord C2 exon
chr4:80031721-80031843
Length
1877 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTCCTTTCCTCTTTCCCAAGGCT
3' ss Score
8.38
Exon sequences
Seq C1 exon
ATCCCATGCCGAAAGGCTATGAGCAGTATTATGGCTTCACACAGTTTGCATTAGAGTTAAATGAAATGGATCCTTTGTCAAGGTCTTTATTACCACCCACCGACACTCGTTTTAGACCAGATCAAAG
Seq A exon
GTAAGGATGTTTTTCAAAGCTCTTTCTCTCCAGAGACATTTAAAACAATCTACAAACAGTGGCATTCACAACTGCCTGGCCCCCTGGAGTCTGAGGCTCTTACTGTCCATCAGAAACACAAGGATAAAATGAGGGCTTGAAGCACTCTCTCGGAGGGGCTGGAGTCTGTGCTTCCACCTCTGTGTGGTTCGGCCTTCACACATCTGTAGGGACCCATTTCTATTGAAATACCGGGAAAGAGGAAGCAAGGGGTGGGGGCTATTTTAAAGACTTTCACTGTGTGTAGTAATAAGGAATTTACTGTTTATTCGTAATAATGAAGGCACCCAGCTCTCCTGACCCATCCATTCCAATTCTTTTCAGTGCATTGGGATCTCACTTCTGATTCTGGGCTTGCTATTCATGAGTCGTGTGGTCTATGACAAGGCTTCCCATCTTCCCCAGCCTCAGTTTCCCACTCTGTAAAACAGATTAATCTCCCCCTGAACCTTCTGTAATCGAAACTCAAAAATCTAAAGGCCACATGAAAGGAAAGATGACTGTGTACAATCTAGTCTTTTTACAAAAGCCTTGATGACGTGATTGAAACAGGTGCATAGCTGGGCTGGACAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATTGATGCCCTTTTCTGATATGCCTGAAGACAGCTACAGTGCACTTATATATAATAAATAAATAAATGAATTTTTAAAAAAATGAATCTTAAAAAAAAAAACAAAACAAAACAAAACCAAGTGCATAGCCAAGTTCCAAGATACTGATGCACACAAGTCTGTATAACCTTACAGTGCGGATTTGGTCTAGAAATCAGGAAGATATCACTCGATAGGGAGAGAGTGGATGTGGGAGAATCAACAGTTCACAGACAAGAAACTCAAATATTTCTTAAACATGGGGCAAAAACCAGGCGAAAATACCATTTCTTAGATTGGGGGAAAAATATGGCTGGTAACAGCATGCTACAGTATAAATTAATATATAATGTGAACTATATTATAATGTAAAAGGGGGTATATAAATTGCTTCAACTCCCTATAAAGTATAGTTTTATAATATATCGATTAAAGACTCGCTCTTTTGTCCAACCATCCTAAGTCTGGAAGTTTCTTGTACAGATACACTTCCCAGTGTGTGAATGGTGGTTGTCCAAAGTGTTTCACAGCAACACTAAGAATTACACTAAAAATAGTAGGACCAACCTAATGTCTATATTTAGAGCATATAGTTAAGGTATGTCCACAAAACTGAATACAGCTTTTAAAAAAAGATGTCCAGCCTTACTGTGCACAGATCTCTAAGATGCGTCGTTGAGTAAAAAGCAAAGTAAAACAATGCTGTTTTGCCACTACTTGCGCACTTAGAATGGAGGAATGAATAAGAATGTGTATTTATATTTGAAAAATATGTACTTAAGAAATGAACAGTGTGGAGCTCCTGTGGTGGGAGAGTAGGGGAAGAAGAATACACACACACACACACGCGCGCGCGCGCGCGCACTCGCGTACACACGCACGCACACACGCACACACGCACGCACACACGCACGCACACGCACGCACACACGCACAGGCACGCACACACGGATTTCGCGGGTTTCTCTGGATACAGAGTTTGAACCCTGTAACTATCACCTGCTCACAGGGTGTCATCCTCTTCCTGATTCAGAACGTGACATCATGGTGGGAAGAAGACTGGGCGTAGGGGGTTTTGAACATCCAGTCTTGTTTGTTCACAGAAGTGGCTGGTTATTATTTTTTCAGTGATATTCCTTTCCTCTTTCCCAAG
Seq C2 exon
GCTTCTAGAAGAAGGAAACATAGAGGAGGCTGAGGTGCAGAAGCAGAGGATTGAGAAGCTGCAGAGGGAGAGGCGGAGGGTCCTGGAGGAAAACGGTGTGGAGCACCAGCCCCGGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.1=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAGTATTATGGCTTCACACA
R:
CTGAAAAACCGGGGCTGGTG
Band lengths:
231-2108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]