HsaINT0118640 @ hg19
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24843934-24846521:-
Coord C1 exon
chr7:24846395-24846521
Coord A exon
chr7:24844057-24846394
Coord C2 exon
chr7:24843934-24844056
Length
2338 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTTTTTCCTCGATGCCTCAGGTT
3' ss Score
8.23
Exon sequences
Seq C1 exon
ATCCTATGCCGAAAGGCTACGAGCAATACTATAGCTTCACACAGTTTGCGCTGGAATTAAATGAAATGGATCCATCATCAAAGTCTTTATTGCCACCTACTGACACTCGATTTAGGCCAGACCAGAG
Seq A exon
GTAAGGATTTTTTAAAGATTTTTCTCTCCAGAGATGTAAAACCCTTTACAAAAAGTCTTATTAACAATCCTTAGGCCACCAGAGGCACCTGAGAAAGGTGGAAAATGTCATCAGGAATTGAGAGGTGGGGATGCTTTAAACAATTGTATCACGGAGGAGATGGGGCCCAACTAGGATCCATGTGTGGCATGGCCTTTATTATCTGTAAAGCCCCATTTGCATTGAAATGCCAAAAAAGGTGTTTATTTTGAAGAGTTTTACTGCATGCAGTAATAAAGAACTTAGTGTAAAGTAAGTAAGTTAAAACCTCCAGCTCCCCGAGCCCTCAAATTTAAATGATTTTGGTGCACTGAGATCTAACTGCTGATTCTAGGTTGCTGCTCACAAGGTGTGTGATATATGGTAGGTCTTTTCATCTTTCCTGGCCTCAGTTTCCTACTCTGTAAAATGGAAATAAGAATGTCTCCCCTAAGGCCTTTCTAATTAAGACTCAAAATCTAGAAGCCCAAGGAAAGAAAAGATTGTTACATTTGGCTTTATTAAAAACAAACAACACTTTGGGAGGCCGAAGCGGGCGGATCACTTGAAGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGCGAAACCCCGTCTGTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCACATGCCCGTAGTCCCAACTACTTGGGAGGCTGAGGCACGAGAATTGCTTGAACCCAAGAGGAGGAGGTTGCAGTGAGCCGAGACCACGCCATTGCTCTCCAGCCTGAGTGTCTCAGTGAGAACTCACACCCCCACAAAACAAACAAACTTAAGCCCTTCTTTATGGCAAAATAAATAAAACTATATATATAAGGTCAAAAGATAAATGACAAACGGAGAAGTCCGTATCTGCAACTCATGTCATGAATTGCCTCTAGAAATCTAGTAACAGATCAACCCATTAGAAAAAATGGACATAGGGAGGTAAATTCATTTTGCAGGGATTGAACACTGTTGTTAGCAAATGCCTAAAAGAGATGTGAAACAGTTTACGTATGTCAGCTGTAACAGTTGGTCCCAAATGGGCCCATTCCCCTAATTTATTTTAAAGAAAGCCATACATAGAATGCTTCAAGCTATCTTGCTATGCACATTATGCTTGTACTGTTTCGTGCAGTTTGTCTACTTTTTTAGGGAAGTATTTTTTGTATAAAGTCTGTTACAATTGTGTTTCTTAAATCAAGCCTAAGAATGGAGTTAATTGGAAATATACAGTATATATTAATAACGTATGTGGTGTTTAAAGAATGGCAAGCATTGTTAATTTCTGTGATGAACATTTTCAATTAAATTTATCTTAAGTTTGTGTTAAAAAAAATGGACATAGGAAAATGAACAGTCCACAAAATAGGAAATGCAGATATCCCTTAAGCATGTGAAAAGATGCTCAGCCTTAATCATAATAAGAAAAATGCAAATTTAAAAATCATGTCGACATCCCAATTTTTAACCTATCAGATTGGCAAAAATTCAGAAGTTTTATACACTTTGAGGTTATGGGAGAAAAGGGCACTCTCAGCATTGCTGATGGGAATATAAATTGGGTATGATCCCCATAAAGGGCAGTTCAGTAATATATAAATTACACACTCACCCTTTCATCCAGCAATTTCACTTCTAGAAATTTCTCCTACAGATTTTTCCTACTTACTCATGTAAAATGATGGATATACAAGGTCATTTATTGCGGCATTGTCACATTAAAATGATTCAAATGATTCAAATGTCTATCCATAGGAAATTGTCTAAATTCATATACATCCACGCAACTGGATATTATGTGGCTATTAAAAAATGAAGATGTATGTACATCCATGGAAAGATCTGTAAGATATATTGTTAAATAAAAAATAAACCAAAACCAAAAATCAAGGGATACATAGCATGCTACCATTTATATTTTTTAAACGGAGGGAGGGATAAGAATATGTGTTAATATTTGTTTATATACACATGAAGAATCTCTAGAAGGATGCAGAGGAAACTAATAAAGTGGGTTTTCTAGGGTGGGAGGGTGAAGGTGGCTGGAATTAGAGACAAGGAAGAAAGGAAGACTTTGCCCCAAATTCTTTTTTGTAGATATAATTTTTGAATTATGTAAATATCACCAATTCAAAAAAATATCTTCTCTGACTACTTCAAGATACGGATTAAACGGTTGGGGCGGGGTCTTACGTATAGGAGAGGATTTTGAATATCCAGTCGTGGACACATGCAAGTTGAGTAGTAATGATTGTTTTGTTTTCTTGAATTCATATCCTTTCATTTTTTTTTCCTCGATGCCTCAG
Seq C2 exon
GTTTCTAGAGGAAGGGAACTTAGAAGAAGCTGAAATACAAAAGCAGAGGATTGAACAACTGCAGAGAGAAAGGCGGCGGGTCTTAGAAGAAAATCATGTGGAGCACCAGCCTCGGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-OSBPL3:NM_145321:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.1=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)