BtaINT0105971 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71486569-71488446:+
Coord C1 exon
chr4:71486569-71486730
Coord A exon
chr4:71486731-71488286
Coord C2 exon
chr4:71488287-71488446
Length
1556 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ATTATCTATAAAATTATCAGAGT
3' ss Score
2.78
Exon sequences
Seq C1 exon
GTTTCTAGAAGAAGGGAACTTAGAAGAAGCTGAAATACAAAAGCAGAGGATTGAACAGCTGCAGAGAGAAAGGCGGCGGGTCTTGGAAGAAAATAAGGTGGAGCACCAGCCGAGGTTTTTCAGGTGTGTAAATGGTGGGGTCCTACGGGTCATTGTTGGCAG
Seq A exon
GTACTGGTGACACCCGTTGCTTCTGGACTGAGGAGAGTGGATGGGGTGTCCCCTCCCCGTGAGAGTGTTCTCAGCACTTTCCCTGCTTCACAGTGGTGACGTCTGTCCTTTGCCAGGGCCGGTCTTTGTGTGGACACTGCCTCCACCCTCAGTCGTCCTGCTTTTTTGCATCCCTTGCTCTTTCCCTATGCCTCTCAGCACCTCCCACAGGACTTTGCAGAGAGGTGCTCAGTAAGAGTTTATGGGAGAAGCAAAGAGACCAACCAAACCCAGCTCCCAATACCAGGCCAGTCTGTTCAGACGGGATCTAAGATTGGTTTCTCTGCATCCCCTCTCATGAGTATAGGGCTTCCCTGATAGCTCAGTTGGTAAAGAATCCACCTGCAATGCAGGAGACCCCAGTTCAATTTCCTGGGTCAGGAAGATCCCCTGGAGAAGGGATAGGCTACCCACTCCAGTATTCTTGGGCTTCCCTTGTGGCTCAGTTGGTAAAGAATCCACCTGCAATGCGGGAGACCTGGGTTTGATCCCTGGGTTGGAAAGATCCCCTGGAGAAGGAACAGCTATCCACTCGAGTATTCTGACCTAGAGAATTCAATGGATTGTGTAATCCTTGGAATCGCAAAGACTCAGACACGACTGAGCGACTTTCATTTTCTCATAAGTATATTCTGTACAGTGATGGAGATAATTAACCATCATCAAACTAGAAATTCCAAGTACTAATTCTTGAGTTGCAGAAGTTCCAATATACTGGGGCTTAGATTTGGAACATTTACTATCATTTTAAAAATAACTGGCTAGAAGGCTCTTATTAAAAATAGGCTGAAAGTTTAGAAGGGACATCCAAGATCGTCTGCCCTTCACCTCCTCTCTTATTAACTGAGAAGAGGTGAAGGACCAGGGGACATAGGTGATCTGTGGAAGGACCCAGTGGACTGTCCCAGACAGGGGCCTGGCTCTCTTGACTACAGGCCAGGGCGCAATATGGTTCTGGGGTTTTTTCCAACAAGTTTTTCTGGGGTTTTAGCAATAAGTTATGTTTTATCCCCCCAGTATAATATTCTTTCCCCTCAAGTTGGTGTGGATTTTGATCACACACTAAGGATTTGAGTGATTGAAGATCAGTATAGTAGAGTTTTATCCTGGAATATTCACAGCTTCATTTAAACATTTAATGAATACGTTTCCTTAAATTATTTTTTTCAGAAAGGCAATGGATAGGTAAATGGATAGACTAACAGACTGATCAGTTGATTTTACTAATATTTGTTAAAGAGGTTCGCTACAGTATTTTTAGGATCATTAAATATTGTGGGTAACCAAACTGTCTCAAGAACTAGATAAGGAGATTGATCAACTTGACCTGATATGAGAACCTGAAAAATCTTCATAAAGTCTATGGAGCTCTATGGGAATTGAACTACCATTTAAATGCAAAATATAAGATGTTACCTAGGCTGTCGCTTCAACCATGTAAGAATTTTGTCTGGAATAGAGAAGGACCAAACCCAGTGGCAGCTCTTCTTCTTTTTGATTATCTATAAAATTATCAG
Seq C2 exon
AGTATTGGATGTGGCAGGTAAAAATGTGAGAAAAGGTGGGAATTGTTCAGCAGTAGCAGTCCTGGAACTGTTCCAATTAGAAGCTGGCAGAGATGACAGAGAGGAGGAGTATGGGGACTTAGATGTTTCCATTGACACTAAGGAGTCACCAAAGTATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342:ENSBTAT00000025767:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(15.4=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(2.3=14.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAACTTAGAAGAAGCTGAAA
R:
TTAATACTTTGGTGACTCCTTAGTGT
Band lengths:
310-1866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]