HsaINT0118641 @ hg19
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24836164-24844056:-
Coord C1 exon
chr7:24843934-24844056
Coord A exon
chr7:24839899-24843933
Coord C2 exon
chr7:24836164-24839898
Length
4035 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
3' ss Seq
AATTGTTTCTTCTTTCACAGGAA
3' ss Score
10.15
Exon sequences
Seq C1 exon
GTTTCTAGAGGAAGGGAACTTAGAAGAAGCTGAAATACAAAAGCAGAGGATTGAACAACTGCAGAGAGAAAGGCGGCGGGTCTTAGAAGAAAATCATGTGGAGCACCAGCCTCGGTTTTTCAG
Seq A exon
GTTCGTGCCTGGATTGAGTAGGTTTTTGGTTGATAGGTGGTGCCAGCACGTTATGCTTCTGGTTTGCAGAAAGTGAACAGTACTGTCCCCAGATAAGAGCATTCTCCAGGCTTTTCCTGCTTCCACGTGGGGGTACTGCTCCTCTGTGCCAGGCCCTGTCCCCCGCACTTACCTTCAGGCTCTCCCTCTTGCTGACTTCAGACAGGACTAGGGCCTGCATTTTTGCATTCCTTGAGCTTTTCCAGTGCCCTCAGCCAGTGAGTTTGCAGAGGAGCTCCTCAGTCAGGGAGCCTGCCAGAACTGGGTCCCAGCACCAGGCCAGCTTATTAAATCCACAGCTAAGGTTGGTCACCCCCATAGGCATGTTTTACACCATGACAGAGATCATTCACGATCACTCCACAGTTAAGCAGTATGGAAATTCCAAGCAGTCTGTTTCTTGCATTGTAGAAGTTCCAGTACACTTGGGCTTACATTTACTGTTATCTTTAAAATAACTTGCCAAGAAGGTCTTGTTAAAATAGATATAATTTTTTTTTTTTCTGATACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCTTGACTCACTGCAGCCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTACAGGCGCGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCTTGTTGGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCTGCCTCAGCCTCCCAAAGTACAGGTAAGAGCCACCGTGCCCAGCCAATAGATATAAATTTTTAAAGGAGGTATGAGAGATCTTCAACCCTTCACCTCCCCATCTCCTCCTATAACTGAGTAGAAGAGAAAGCTCAAGGCAGGTGGGGGATCTGTTGAAGGACTCGGTATAATACCCTGGAATGGGGCCTGACTCTCCTCACTACCAGGCCAGGGCCTATATGATTTTAGTTTTTCTGTTTTCTTTTTTTAAAAAACTTAAATAGGTGTATGTGAAAAAGCAGCAAGTTCCTGCTCTACTCCATCTGCCCAAGTCCTTCCAGGGCCACCAGTGTCTTTTCATTGTTTTGGGATGTTTTTTGTTTGTGTTTTTGTTTGTTTTTAGTGGACAACAGAAGTACTTTTAGGATTTAGTTATTAATAACAGCAGCAGTAATAAAATCTGTATTCCAAAACATCAAAATAGTGACAAATAAGGTTTTGTCTTGAAGAATATGATGCTCTTTTCCCTAAAGTTGATGTAGATTCTACTAGATCCCTTCTGATCATTTCCACAAATTCAAGATATTAGTGATGGAAAATCAACTGGCCAAAATTTCATCCTGAAATATTCAAGCTTCATTTAAACGTTTAAAGAATAAGATGGAAATGTTACATTCTTTTTTGAAAAAGGCAAGAAATAGAAAAATGGATAGATTAACAGACTGATCAGTTGATTTACTGATCAGTTAATAGATAAACACATTACACCCTTAAGTAGGTTGGTTCTTTTTCTTCCATACATTGTCTATTTTCATTTTTTAAAAAAAGAAAAATGTACAATTATGAAGATGTTCATTACAGTACTTTTTAGGATCATTAAAAATGGTAGGTAACCAAACTGTCTCAAGGACTAGTTAAGGAGATTCACCAACTCGATCCAACATGAGGCATTAAGGATGACCTTACGAAGCCTGTGGAGCTCTGCTGGAAACACATTACCATGTAAATGCAAGATACAGAATGTGATTATGCTGTCATTGCAATCAGGAAGGAATTGTGTCTGGAATGAAAAAGGACGGAAAGCTGCTTCAGCTGGGGCGGCCATTGCTCTTTTTCTTTTTGACTGTCTGTAAAATGATCATAGTATTAGATGGGAAAATTTTTTTCAATTGGAGAAAGAGCGAGAGTTGTTCAGCAGTAGCAGTCCTCCTTGGGACTGTTCAAATTAGAAACCTGGCAAAGAGATTTTGGAGAGGAATATGGGGACTTGGATGTTGTCATTAACACTTACTGAGGAACAGCAACAAAATCACTGAAAATTCTAAGTGGAAGCTGGAGCTCAGACCAAATTGAGCCTCTTTGTTTTAAAATAGTGAACTGTCTGATACACAGATTGACTCATTTTTAAACATATAGTGTTACTGGAATAGGGAAACAAGTGTGATAAAAATCTACATTCCTGAGAGTGTAGGAAAACAGGCACACTCCACTTTTGCTTCTAAACCATATGGTAATATCAGTCAGAATCACAAATGCACATACTCTTTGACCCAGCCATGCTAATTACAGGAATTGTTAATGTAACCGTACTCACACACATACAAAATAACATGCCGAGCTAGAGTTTAGAAATAACCTAAGTACCCATCAGTGGGGTACCTATTAAGTAAATTGTGGTCCATCCATACAATGGAATATCATACAACTGTATAAAAAGAAAATGAGGAATCCCTTATTGCTAGAGTCACCAAACTTTTCCTATAAAGAGCAAATGATAAGATTGTTGGTTTTGCAGGCCATCAGGTTCAATTCATTCAGTAGCTATTATGCAGCCCCGCTGTTCAGCATTGAAAGCAGCCATAAACAGTATTTAAACAAATGGACATGGCCATGTTCCAATAAAACAGTATTTCAGAGATACGCAGAAGGCTGGATTCGACCCTTGGGCCATAGTTTGCTGACCCTTACCTTATTGTACTAATCGGAAATGATCTCCAATATGTTTCATTATGTCAAAGCTGAAAGGGTAGAACAGTGTCTGGTACAACATTATGTCAGAATGAGAGGGAATAGAGTGTGTGTTCACACACACACACACGGAATTTCCCTGAAAGAATGAAGCTGATAACATCACTACCTCTGAGGAGAAGAATCAGGAGGCTGGCAGAGAGGGGGAAGATAAAAACTTGAAGCTGTATACCCTTTTGCGCCCTTTGAATTTGGTCTGTGTCATATATTCTCTATTCAAAGAATAGAAAATCAGGACTAATCTCTCCAGACTCTTATGGCTTTCAATTACTTTTTTTTTTTTTTTTTTTTTTGAGAAGGAGTCTTGCTCTGTCTTCCAGGCTGGAGTGCAGTGCCGTGATCCTAGCTCTCTGCTGCAACCTCTGCCTTCCAGTTCCAAGCGATTCTCCTGCCTCGGCCTCTTGAGTAGCTGGGATTACGGGTGCCCGCCACCATGCCCGGCTAATTTTTGTATATTTAGTAGGCACGGAGTTTTGCCATGTTGGCCAAGCTGGTCTTGAACTCCTGACCTCGTGATGTGCCCGCTTCGGCCTCCCAAAGTACCGAGATTACAGGCGTGAGCCACCACACCCGGCCTCCTTTAAAAAAAAAAAAAAAAAGTTAACCACTTCCTATGTACAACCTGGTTGATGTGTAGCTTTTGTGCAGTCATTCCCAAGGTGCTGACAGTCATGCAAGTTATGTTTTGTATATGACAGACTCTCCCCACATCCTCCTCCTCTCAGAAGCACCACTTTTCATAGCCTCTAAGTTTGAGAAGTTAAAGTCGTGTAACAAAATGGGCCAGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGTCCGAAGTGGGTGGATCACCTGAGGTCAGGAGTTCTAGACCAGCCTAGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGTCGGGCATGGTTGCACATGGCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGATTGAACCTGGGAAGCAGAGGTTGCAGTGAGCCAAGATCATGCCACTACACTCCAGCCTGGATGACAGAGCGAGCCTCCATCTCAAAAAAAAAAAAAAAAAAAAAGTAACAAAATTATTTCTGGACATCTAATTCCCAGAATTCCCGGTCCCAACACTCTGGGACGCTGAATGCATGTGGGAATGAGGATGGGGAAAGCAGGGAGGTTAGGAAGGAAAGAGACTTGAGAATGTGACGCTGGTTTCAAGAGTCTGCAAGAAATTGTTTCTTCTTTCACAG
Seq C2 exon
GAAATCCGACGATGACTCTTGGGTGAGCAACGGCACCTATTTGGAACTTAGAAAAGATCTTGGTTTTTCCAAACTGGACCATCCTGTCTTATGGTGAAAAAGTAAAGAAGAAAGATAACATTAGTGTATTTCTCCTGTGCTTGCCTTCTGAAGTGGCACAAACCTGTGTTTATATATTTAAAAGATACTCTAGGATGATCACTTGTGCTTAGCTTAGCATTGTAACTCTTTAAGTCTATATTTTCCTCAGTGCGTTTCTTTACAATTTCAAATGTTACCCTGATTGTTTATATGAATGTAGAACACCTTGACATTTCTTTTTATATATAAACTATTTAATAAAAATGAAAGATTGAATGTTCATGTGTGGGTTAAAAAAAGAAGCTTTAACACTAATTTTCCAAAGGTTAGGGAAGATTCCAATTAAATTTATGCCTTATAAAATTATGTTGTAGAAAAAAAATCAACCTCTCCCAGGTGCATTAAGAAATAAGAATTCCCAGGGTTACTCACCCATGCGTAAGCTACCCAAGTTTAATTTGGTAGCTGAAATATCTTTTTGCCTCAGACAGCTCTTGAATTGCTCATACAGAACAATTCTGCTGGTGCTGGAGTCTGAAGAATATTTTCATTTGCATTTTAGTGGTTAGGGAGAGGATATAAGATTAATGGAATGTATATTTTTATATAAGACGTATACGGCACCTTCTTGAAAAGGAAGCATTTGAACTTGTTCCTCCCTATAGTTCTATTGCCTTATATGCAAAATTGTACCCTGTTGCTCAGAGAAATTATTCATAAGAGAAAAGAATTCCAATTAATTAAATATCACAATAGCATCCCAGAGAGACAGTAGGAAATTTCTCCTTAGTGAGAGCTGAGTCCTTGAGAAGTTAAGAGACTGTTTCCTGCTTCCCACCCCACCCCGTTTTTTGTCCCTCCGTTTGATCACCTCCCTGTTGAGTATGGAATGTCCCAGTTTAATATAAAACATACAGTTTATTCCACACAGCAGTTTGACTTTGTAAAAGTTTAGCAAAATAACTGATTGTTTTGGATAACTCAACATGTTTTTCTTAAATGCTGTTTTAGTATTTTCTACCTCTTAATAAGCACCATATTTTAGATCTTGTATAAAAAGTTGCCATCTGCCTTATAGACAAATGTAGAGAATTGATGTTCTTGCTTTGTGTTGTGTTCTGGTAAAGCTTTAAGTGAGTGTCTTACCCCTTTCCTATACTTTCTTGTTATCCATATCATTCTTTTGTGAGTTTTGCAGCAGTCTTGAATAATACAGATTATAACTACTGAAAGGGGAACCTTCGTCTTTTTAAATGTGTTATTTCACATTACAATAATATGTGTAGTAGTTGAATTGTGTTATCAAAGCATGTCCAACTTCTGTCCAGATGACATTAAAACCAAAGCCTAATTGTTAAGCCTCTTATTCTAAAGTCCATAGCAATGCTATGGAATATCAAGTATAATGATGTAGTAAAAAGATTTCTCCAGAAAACACTTTGAGATACTTAAAGAAATTCAGAGCATATCGAATGTTATGAATGAAGAGTAAAATAATTACAGGAAAAGAATGCATGATTTTTCATTGTCACACCAAATAACCAGTTGGACAATATTGCATTTTCAAAATGGAGAGTTATTTAAAGTGGATGTGTAGCCTTCTGGAATCTGCACGTGACTGGCATTTTAAAACAACTCATTAAATATTGGATTCATTTTATCGAGATGCCAAGATGAACACAATGTGAATATCATTTCCATTTCTAAGCAGTTGAATGACACAGTCAGATTCTTTGGTGTATGCTTTGTTCTTTCCATCTCAAGCATTTATCCAAATTCTGCTCACAGACATGAGGAAGCAGGCTGTAGATTTAAGGGCACTCAAGGGGAAAACAAATGTAGTTTCCACAGTGTGAGGATAAATGTAGAATCGTGGTAATATTGGCTGTTAAATTGGCCTGCTCCAGAGACTGGCTCAAAAAAGAAAGAAGCAACGAAAACAAAATGCACAGCCTGAATGGACGTAGCACTGTCATGTGGCATTTGGAAAATCTTTAATTATCCTAATGTTATTTCACTTGCCCTTATGCTTTATTTTAGAGTCCCAGGGACAACTGGATGAAACATTACGTCTGTAGTCATCTTATTTGAGATGGGGGTGGGAACGAATTAAAATATGATAGAGAACTATATGCAGATTTTAAAATCTAGTCAGTACTAGCATCTATAAAGGGCTTTTCTGAAATTTAAACAGCTTGGTGATGCATCCTGATATTATAAGCTTAAAACTATCTTGAGGGGGAAATGACTTCTTTTCTCCTTCTGTCCCTTTTCTCAAAAGCATCTTTCCCCCAAATGTATGTCTCTAGGACATTTTATAGTTTTAAGAGGAAGAAAACAGAAACGTGGCATCATTTGGGAAGAACCAAGGTAGAATTTAATTTTCTGGACTTTAAATCTCCTGGTTAAATAATGCTAATCACTGTACCATTTGAGTTACATGTTTTAACCTCTTTTTTTTTTCTAATTATTCCATCCAAAATTTCTGGTGAATTACACAGAAATTTTTGGAAATGGGACTTTGTGCAGGTAACCACCCTGCACTTCAGGTAATGTTCCTGTCACAGCTGTCGACTACCCCACGCTGCAGGAAATCCATTCAGAAATGAGCTAACAGTCTCCAGTGTAGCAGGAGAGCCAGTCACTTCCCTCCCCAGGCCCCAAAGCACCCCAAGGCTGGTATTCCTTGAGTCATAGGTATTAATAATAAAAGCCTCAATGCAGCTTCTCCATGTAGTTCCTCTCCTACAAGCCAGGTGGATTCTGGTCCTAACTAAAGAGATGGGAGTTCACCTGAGGGCAAGAAGTACCCAGGATGCCCAAACAGCCGCACAGGTGTCCTGTGCTTCCTGTGAGACTTCCTGGGGGAAATATACAAACTAATATATTTTTTAATGTTTACGTCATTTACACTGCTGCTTTTCTCATATTCTGCTTTTAATTACTTGTAGTAAATCATTTGTTTGGGCTTCAAGCACTGTCTTCCATCTGCATCTTCCAGATTTATCATGAGTGATCTTGTTCTACTGTTAAAGATGTCAAGCCTAAAAAGTAATAAAGTTTTTATTTGGCTGTTGAACCTTGATGTAGCCCCTACTACATACACTACAAGTTATGCCTTCTGGCTACTACAGAATCTCCGCAGACCTTTTAGTTATGAGTAGAAGCAATAAGAAGGTGTCCTTATGGTCTTAGGAATAATAGTTCCAATGTATTGGCATAATTTGTTTGAATGTCTTTATTTTGATATTAACACCGGCATAAATCTATTTTTGCTACCAGATGATAGCTATTTTCATTTGCTCTATTTTCCTCTGCATTGTACTAATCTGTTACTCAGTGTTAGTCTTCATTTTTCTGTGTTGGAAACCTGCGTCATGTAAATATCTGCAAATCATGACAGTCTAAAGTGCAAACCATTTTCAGAGACTTTGGGGAATGCAGTGATCAGAAGTGGCTAATTTATTTTATTTCTGATTATTTTATCCAGAGGGTACTTTTTTAATGGATATTTGTAAATCTTCCACTTAACCACTGAAAATTATTTTGTTTTAATCCCACCCTTCCATCCATACCTCTGCCTCCCCAAAAAGCTCCTATTAATTTGCTTATCCCCCTCATGTAGCTAGTTGAATGTGAATAAATAACATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-OSBPL3:NM_145321:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.8=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)