RnoINT0105777 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80025440-80031843:-
Coord C1 exon
chr4:80031721-80031843
Coord A exon
chr4:80029567-80031720
Coord C2 exon
chr4:80025440-80029566
Length
2154 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
3' ss Seq
ATCTGTCTCGTCTCTCACAGGAA
3' ss Score
11.15
Exon sequences
Seq C1 exon
GCTTCTAGAAGAAGGAAACATAGAGGAGGCTGAGGTGCAGAAGCAGAGGATTGAGAAGCTGCAGAGGGAGAGGCGGAGGGTCCTGGAGGAAAACGGTGTGGAGCACCAGCCCCGGTTTTTCAG
Seq A exon
GTTCGTGCCTAGAGGAGGTGGGAAGAGGAATGTGGCTAGTCTTTTGGGACAAATGCCAGCTTCTCACGACCATGGCTGTCTTGAAAGGGTGTCTCCCCGGCTCCTCCCCAGTGACTCAGCAGTGCCTCCCTGGAGCAGCAGAGAGGGGCACTTTCAGAGCGGGGCCCCAGGGCTGGGCCACCTTGTTAACATTCGCAGCCGAGGCTGCTTGCTGGCATGGGTAGATCACAGAATGGCCGGCTAGTTGATGACAGCCCTGCTGTAGGATTTGAAGTACCTGGGCCTCACATCAGCAGTTCCAACACACTTGTGTTTTGAGTTTGGAAGGCCACATTGGTCTTCACTCTTAACATAACTTCCTGGAGCTAGGAATGAGTGACTTGCAGTCATACTAATAATCCCAGCAAGAGGGATGCTGGGGCAAGAAGATTAGAAAGAGTTTGAGTCTAACCTGGGCTATACTGTGAAACTGTGTCAATCAATAAAATCAATCAACCAATCAATAAATAGTTGAGAAGGTCTTGTTTAAAATATACGTAGAATTGTAAAAGGGCTGTGAGCAATGGTAGCTGCTTATCCTCTCTCTTCCCTATTGTAACTGAGAAGAAACAGAGGCCCAGAGAATAGAGGGAGGTTGAAGAGTGACCAGGGGAAACTTCCAGATGAGGCCTTTGCCTCTCCTAATAATCTTGGCAGGCGTCTGTGTGATTTAGAGGTTTTGTCGCAGCCTGAGTAGCAGATGCAGCCTGTAGGGTTCACTCCTGTCCAACCTCCAGTGCCTTATTGTTCGGTGTGGCCCCTGGGTTGGGTTATTGGTATAGACAAGGGCAGTAGCTTTTGGAAGGCTGTGCAGACTCATCTCAGCACCAGGACAAAAGTCTATATTCCAAAATACTGAGAGAGCCAGTCCCAGTGTCAGACCTGTAATCCTAACACTCAGGAGACAGAGAGAACAGGATTGCAAGTTCGAGTCCAGCCTAGGCAAGTTAGTAATGACAATGAAATCAAAACCCTGCCTCTGAAGAAGAATTAAAGTAGCACTGAGAACGTAGGCGTTATTCCTCGTGGAGTTAATGGCAGCCTAACTGCCCATCAGTAGGACAACTGCTTAAGTTGACCTATCATCTATATCCACAACTGATATAGAAAACCCCCAGCTGTTTAGAAAGGAATGGGAGCCCCCACCTCTGAGGCCAGCAAGCTTTCCCACAGGCAGCAGATGGTAGCTGCTGCTGGCTTGGCAGGCCATAAGGCCTCAGCCATTACTCCAGTTGTTCAACATGAAAGCAACCATGGATGATATTTAAAGAAGAGGGTAGGGCTGGGCTCTAATAAAACAATATTTCAAAGATTATAAGGGCTTGGCATGTGGCTCATTGGTAGAATTCTTGGATAGCATTCATGAGGCCCTGGACTTGGTCACAAAACACACACAAGCTGGAGGCTGAATTGGGCCCCTGAGGAACAACGAAGACAGATATCACCCACGTTACTGTGTGGATGAGCCCCAGTGTAGACTGTGGTGTCAACCGCCCAAGGGCTAGAGCACTGCCCAGTACTGTGGAAGGGAGCAGGGCACTGTGTGCAGCACCCGTGGGTGCTGAGTGAAGCTGACACTCCCACCCGGGAGCAGACGTGAGGTGGGAGGTGGGGCTGACTAGAAAACGCTAGCTCTGGGTCCTCGTGTGCCCTTTGAATTTCCAACCACTTCTTCCCTAGAGCTGCAAACCAAAGTTCTCTCTCCAGACCGTTAGGGCCCAGTTCCTCTCTGTCCGCTCTATTCTGCTTTGTGCTAACTTAGACTGGCTGTAATCAGTCCTGTTGATTGGGGAGTATTTAGTCGTTCCCAGTGTGGTGGCTATTCGCCCACCCCTGTTTGATGTTCAGCACACAGAGAGAGGATGGATGGACATGGGCACATGCGCGCGCGCACGCACACACACAGATGTCTTTTAGAAGCACTACCTTCCCAGCTTCCAGGCTTAAGAAATATATATATGAGAAGTAAAAAATGGCTGCCAACCTTCAGACAACACTCGAATACCAACACAAGAACAGTGAATTTTCTGGAGTGAGGTGGGCAAGCACAGAAGGAGGGATGGAGAGGAGGTAACAGCCGACTCTACAAGAAGCTATCTGTCTCGTCTCTCACAG
Seq C2 exon
GAAATCCAGTGACGATGCTTGGGTGAGCAACGGGACCTATCTGGAACTGAGGAAAGACCTTGGCTTTTCCAAGCTGGACCATCCCGTCTTGTGGTGAAATGTAAGGGAGAGAGAGAATCCCTGCACTTTGCCCACAGTTGCTTCCGGAAGCAACACACACCTGTCTGTACGTTTAAACGATAGCAGCCAGAACGATCCCTTGTGCTTAGCGTAGCATCGTAAGCACTGAAGTATATACTTTTCTTCAGTAAGTCTCTTTACAGTTTCAAGTGTTATCACGATCGTTTATATGAATGTAGAACGCCTCGGTATTTCTTTTTATATATAAACTATTTAATAAAAATGAAAGGTTGAATGTTAATGTGTGGGTTACAAAAAAAAAAAAAAACCATTTAACACTAATTTTCCAAAGGTAAGGGGGAAAATTCAGATTTATGCCTTATAAAATCACACTGGAAAAACAAAATTTCCCAGGTGTGCTAAGAAATAATAACACCCAGGGCCACTCGCCCATGCATAGCTATCTGGGTTTAATTGGGAGCTGGGATATCTTTCTGCCTCAGGCAGCTCTTCGATTGCTCATACAGAACAATTCTGCTGGTGCTGAAGTGCCAAGAATACTGTCATCTCGTCTTCGTGGTTCAGGAATCTGTACAAAGTTAGTGGGATGCCTATTTTTTATGTAAGGCGGGTATCACCCAACCGGAAGAAGTCTTCTCTCCCTCGAGTTCTGTTGCCTTATGTATAAAACTGCACCCAGCTTGCTTAGAGAAGTTGCCTTCATCAGAGAAGACTCCATTAATTCAGTGTCCCGATGGCGTCCTAGGGAGGCAGCAGGCATTTTGTTTTTCCCCAGTAAGAGCTGAATCCTTTAAAAACTTAAGAAACTACTTTTGGCTTCCTGCCCCACCCACAGCTTGCAAGCCCTCCTTTTGGCCCCAGTTGAGGACGAAATGTCTCTCATTTAGTATAGACAAACTGTAACAGCCCACGGCAGTGTGACCTTCTAAAACTTCAGCGAAGTCACCGGTGGCTTTAAATAACCTGGCATGTTGTTTCTCCACACAGCTTTGGTATTCTCTACCTCTTACCGAGCACCGTACTTTTGACCTTGTATAGAGAGTTTGACCATCTGCCTTATAGACAAACACTGCTGTTCTTCTGTGTCGTCCTCTGAGAAAGCTGCAAGGGTTTACCTCTCTCCTTGACTCTCTTCTTATTTGTGATACTCTGAGTTCTACATCTGTCTCAGATAGGAGCTACCAAAGGGAAACTGTTGTTCTTGTAAGTGTCTTACTTCAAATCATGATATTAGAATGAATGTACCCAGTAGCTGAATTGTGTTACCAGAACAACTTTGACTTCTGCCCAGAGCACATTAAACCAAAGACTGATTGCTAAGCCTTTGATGCGAATGTCTATAGCAGTTCTATGAAACACTGCGTGTAATGACAGGGTAAAGAGATGCATTTGAGGGCCAGCGAGATGGGCTCAGCAGTACAGCACTTACCCAGCACTGAGGAAAGTCTCCAGGACCCACTTCAAAGGTAGAAGGAGAGAGCCAGCTGCGCAGAGTTGACCCGTTTCACACCAGATAACCGACGGGACAGCGCGAAGTTTTCACAGTGGGGCGTTGAAGGTGAATCAGCAGTCTTTGTCGTCTACAAGTGACTGTCATTTTAAGCACCTCATTAAATATTGGTTCATTTATTCCTTGTTATGGATACACTGAGATGAACCAGCGGGAATCTCATTTCCATTTCTAAGTAGCTGGATGGTGCCACCGGTTCTTTTGTCCCTGTTTTGTTTTTTTCTCCTTTTCAAGTGTTTTTTTTTTTCCGTTATCCACATTTTGACCACAGGCTGGAGATGTAAGGAAGGATCTCAGCAGGGAAACGAAACCTCGAGGACAAATGTGGGATTTTAGTAATACTGGCTGTGAAATAGGCCTGCTTGAGAGGCTGCCCCAAAGGAGAAGGAAAAATGACAAAAACCACAAAATTAAGAATGTACCCCCAGAGTCAGTACAGCCAGTTACTTGAAAATTCTTAAAGTATCTCCTGATATAATTTCTGTTGGCCTTGAGCTGTAATTTGGAACCACACAAACAGCTGATCCAAATGTCTCTGCTGTAGTCACCTTATTTGAATCAGGGACAGGAATGAACAGAGTATGTTCCAGAACCATGTGAAAGCTCTCTAAGTCACCACCAGTGTCTGGATTACAAGCTTCCGGAGATGCAGATGGTCAGGAGGTGCACGCTGTTACTTGAATCTTAAAACTCCCTGCTGGAGGGAGGAGGCTGCTACATTCCTCCTGTCCTGTCTAACACACCCTTCCTCCAAGTTTGTATGTCTAGGACTTGGGTATTTTCATAAGGAAAATAGAATTGTGGGTATTATTTTGGGAAGAATTAAGATAGTTTTAATCTTTCTGAACTGACTTTCTCCAATACACAATGCCAACCGCTGCCCTCTTTGATGTGCATGTTTTAGCCCCTCTCATTCCAATTATCCTGTTTCAAGTTTATGGTGAGTTACAGATGTTCTCCTAGTAGTGGGACCTTGTGCTAACCACACGCTGCACCTCATATATTTTCCTTCTCAGCACTCAGAACCCTGATCTGCAAGGCATCATTAAAGAATGAGTATCTTCGCTGTAGCAAATGAGGGGCGCACTCTCCCCCACAGGCCTTCTGATGAAAGCCTCAGTGCAGCTTCTTCGTGCAGTTCACATCTTGTTGCTAGGATGCTCCTGGTATTTACTAAACATAGGCAGTTCACCTCCCAGACACCAGGGGGATTGAGGTACTAACAAAAGAGATGCAATTCACCTCCCAGACACCAGGGGGAGTGAGGTACTAACAAAAGAGATGCAATTCACCTCCCAGACACCAGGGGGAGCGAGGTACTAACAAAGAGATACAGTTCACTTCCCAGACACCAGGGGGAGTGAGGTACTAACAAAGAGATGCAGTTCACGTCCCAGACACCAGGGAGAGTGAGGTACTAACAAAAGAGATGCAGTTCACTTCCCAGACAGCAGGGAGAATCTGGTACTAACTAAACATAGGCAGTTCATCTCCCAGACACCAGGGGGAGTCAGGTACTAACTAAACAGATGGATGCAGTGCGATTTTTGAGACACTAGGGGGAGCCCGGTACTAACTAAGCAGCCTTAGGAGGGTTCTTGTACTAACCAGATTGGGGGGTGGGGGTTCACTTTAGGTCATAAATACAATTACCTACTAAGTAGCAAGAATGCCTCAGCAGTCCCCAAGCCTTCCAGTGCCTCTGGGGGCTTCCTGAGTTTTTTAATGTTAGCTCCATTTAGGCTTCTGTTTTCCTCATCCTATTTTTTAATTACTTCCAATAAATCATTTGCTCAGCCTTCTAGCACTGCCATTCCTCTGTATTTGCCAGATTTATGATGCATTGTTTTAGTCTACCCTTAAAGAAGTCAAGCCAGAAGTCAAGCCAAACGTAGAGGTGAGGGTTACTTTACTTTTTACTGTAGGCCTACTGTGCACACCCCAAGCTCTCTGAGGGACTGTAGCCATCAGAGACTCCTCACACCCTCTAGCTACCAATCAGAGCTATACGTTTTTCTCCTCATCTTAGGAATACAGGCTACAGTGTTCGGTCAGAATTTATTCGAATGTCTTTATTTTTAATACCAACATCAGCATAAATCTATTTTTGCTAGTAGATCAAAGCTATTTTCTCATGCTTTGTTTTCTGTCTTGTATCGATCTGTGAATCTGGTTATCTTTGTTGAAAACCTACATATCAAATGTCTCTGCAAATCAAGATGGTCTAAAGTGCAAGCTGGTTTTCTGTTTGTTTGTTTTTGAAACTGGGTTCAGGGGCTGCAGTTGTCAGAAGTGACTCAATTGCTTCATTTGTGATGAATTTTTTTATCTTCCTCTGTTACCCCACAGGATATGCTTTTGGGGGAAATGATACTTGTAAATCTTCTATTTAGCCATTTGTAAAATCTAAATCCTACCACACTACCTGTACCCCTTTTGCTTCCCCCAGAGGCTCCTTTTCATTTGCTGTCTCTCTGCCCCTGTGTAGCTCACTGACTGAGAATAAAGAATACAGCAAAAACTGCCTTTGTCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.8=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]