MmuINT0113676 @ mm10
Intron Retention
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50296799-50299438:-
Coord C1 exon
chr6:50299316-50299438
Coord A exon
chr6:50297162-50299315
Coord C2 exon
chr6:50296799-50297161
Length
2154 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TCTCGTCTCATCTCTCACAGGAA
3' ss Score
10.48
Exon sequences
Seq C1 exon
GCTTCTAGAGGAAGGGAACATAGAGGAGGCTGAGGTTCAGAAGCAGAGGATCGAGAAGCTGCAGAGAGAGCGGCGGAGGGTCTTGGAGGAGAACGGTGTGGAGCACCAGCCCCGGTTTTTCAG
Seq A exon
GTTTGTGCCTGGAGGAGGTGGGGGTGGGGTGTACTTCTTCATGACTGTCCCAAAACAGGATTGGGGACTTCCCCTTTGGCTCTCCTGCTCCTCCCCAGTGGCTCAGCACTGCCTCCTTGTAGCGGAAGAAGGGACACGTTCAGAGCTGGTCCCAGTGCTGGGCCATCTTGTCCCATTTGCAGCTGAGGCTGCTGGCTAGCATGGATAGATTTCTCAGGACAGGCTAGTTGATGACAGCCCTGCTGTAGGATGTGAAGTACCTGGGCCTCGAATCAGCAGTTCCAATACACTTGTGCTTGAGTTTGGAAGGCCTGATTGGTCTTCACTCTTCACATAACTTTCTGGAGCTAGGCATGAGTGACTTACAGTCATACTCATAATGCCAGCACGAGGGAGGCTGAGGCAAGAAGATTGGTAAGAGTTTGAGTCTAGCCTGGGCTACCCTGTGAAACCCAGTCAATCAATCAATCAATCAATCATTGAGAGGGTCTTGCTTAAAATATACTTAAAATTGTAAAATGGTTGTGAGCAATTGTAGCTGTTTATCCGCTCTTCCCTATTTTAACTGAGAAGAAACAGAAGCCCAGAGAACACAGGAGTTGAATGAGGAGCCGGTGGAATCTTCCAGATGGGGCCTTTGCCCCTCCTGACAGTCTTGGCAGAGCTCGGTGTGATTTGGGGGTTTGGTTGCAGCTTTTGTAGCAGATGCAGACTGGAGGGTCCACTCCTGTCCAACAGCCAGTGGTTTATTGTTTGGTGTGGCCCCAGGTTTATTTATTGGTGTGGACAACAGGGGCAGCTTTTGGAAGGCTGTACGGACTAATCTCAGCAGCAGGACAAAGGTCTATATTCCAAAATACTGAGAGAGCCAGTCCCAGTGACACAGACCTGTAATCCTAACGCTCCGGAGACTGAGACAGGAGGATTGCAAGTTCAAGGCCAGCCTAGGCAAGTTAATAATGACAACAAAATCAAAACCGTGCCTCTGAAAAAAATAACTAAAATATCACTAAGGACATAGGCTTTATTCCTAATGGAGATAATGGCGGCTTAACTGCCTGTCAGTGGGGCAAGTGTCATCCATACCCACAATGGAATATCCCTCAACTGTCTAAAAAGGGATGGGAACCCCAATGGCTGAGGTCAACAAGCTTACCCATAATAAGCAGATGGCAGATGCTGCTGGCTTGGCAGACCACAAGGCCTCAGCAATTAGCCCAGTTGTTCAACATGAAAGCAACCATGGATAATATTTCAAGAAGAGGGTAGGGCTGTGTTCTAATAAAACAATATTTCAAAGATTATGTGGAGCTTGGCGCGTGGCTTGTTGATAGAATTCTTGGAGAGCATTCATGAGACCCTGGACTTGGTCCCAGCGTCACAAACACAGGCACTGGAGGCTGAATTGGGTCCTTGACCTTAGTGTGCTGGCTCACAGAGGGACAGTGAAGACAGACATCACACGCGTTACTGTGTCAGTGAGCTCCAGTAGAGACTGTGGTGTCAACCACCCAAGGCTAGAGCACCGCCCAGGCCTGTGAAGGGAGAGGAGGCAGTGTGTGTGCAGCCCAAGTGTGTGTAGCTTCTTCTCCGGCAGAAGAAAGCTGACACCATCACTGCCCGGAAGCAGACGTGAGGCTGGGAGGTAGGGCTAACCAGAAAATGGTAGGCTCTGGATCCTTTTGTGCCCTTTGAATTTCTATCTATGTAGGAGATGATCTTTTCCCAGAGCCCTAAACCAAAAGTTCTCTCATGACTGTTACGGTCCAGTTCCTTTTTGTTCATTCTATTTGGCTTTATGCTAACTTAGACTGACCTCGATCAGCCTGGTTGATTGGGTAGTATTTAGTTGTTCCCAGTGTGGTGGCTATCAGTCCAGTCTTGTTTGATGTACAGCATACAGAGAGAGGGTGGATGGGGACACACACACACACATACAGAGGGGGCATCCTTTTAGAAGCACCACCTTCCCAACTTCCAGGCTTAAGTATATATCAGAAATAAAAAATGTTTGTCAGTCTTTGGACACCACTCAAATACCCAAACAAGAACAATGAATTTCTCTGGAGTGATGGTGGGCAAGCAAAGGAAGGAGGGGGAGAGAGGAGGTCATAGCGGACTCTAAGAGAAGCTGTCTCGTCTCATCTCTCACAG
Seq C2 exon
GAAATCCAGTGACGATGCTTGGGTAAGCAATGGGACCTACCTGGAACTGAGGAAAGACCTTGGCTTTTCCAAGTTGGACCATCCCGTCTTATGGTGAAATGTAAAAGAGAAGGAGATTTCCTGTAACTTTGCCCACATTTGCTTCCGGAAGCAGCGCACAGCTGTCTGTATGTTTAAAAGATAGCATCTAGAATGATCACTTGTGCTTAGCGTAGCATTGTAAGCGCTGAAGTATATATTTTCTTCAGTAAGTCTCTTTAAAATTTCAAGTGTTATCATGATTGTTTATATGAATGTAGAACACCTCGGTATTTCTTTTTATATATATAAACTATTTAATAAAAATGAAAGATTGAATGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822:ENSMUST00000071728:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.8=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types