GgaINT0097810 @ galGal4
Intron Retention
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31779228-31782223:-
Coord C1 exon
chr2:31782101-31782223
Coord A exon
chr2:31780647-31782100
Coord C2 exon
chr2:31779228-31780646
Length
1454 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
AACTGTTTAATCTTTGATAGGAA
3' ss Score
6.16
Exon sequences
Seq C1 exon
GTTTCTTGAAGAAGGAAATATTGAAGCAGCTGAAATGCAAAAACAGAGAATTGAGCAGCTACAGAGAGAACGACGGAAGGTGCTGGAAGAAAACAATCTAGAGCATCAGCCTAGATTTTTCAG
Seq A exon
GTATTATATAATAATTAGTATATACCATCATTTATTGAAATGTTTACTACAGATCTGGTTCTGATCTGCCGTAAAGAAGGCTCCAGTTTTTCCCAGGTTTCGTCCATATTCTTGATTTTTATACTTAAGCAATGTAGAGCACTCCAGACTTAGTTAAGGAATACAGGATATGCTTTTTTATTACCACATCCCTGATTTTTTTATTTTTTTATTTTTTTAATTTTTGCTCCAAAGGTAAATGGTATTTGGTCTCAGTCTGGATTTCCCTGACGAGTGAGGGTGGCATCTTTGATTCTTTCAAGCAAGGTGAAGTGTAGGTGGTTTCAGCTTAATTAGCTCTGCTGAACTGCTGAATTCATTGGGACTGCCTTGTGCAGCAATGTTTGGAGCTAGAATCTTTCATTTTCAGGGCTGGTTTTGAACTTTTCCCCTATCTAATGGCAAGAGAGTTGTGATTTAGAGGTCATTCTGTTTCTTCCTGTTGTAAATCAAATAACAGGGGACTTCAGCTGTTGAAAGACAAGAATGAATGCTAGTGGCAACACGGCCTTATGCCCTCCAGCTTCACTGTTCAGGATGCAGTGAAAGAGTTAGACCCAAGATGAGTGCTGTATGGGCGAATGTGTCATAATTAACAGATCTGGGATACTATTTGTTTTTCTAGATAGACACAGTTCTAATGAGGAGTTAGACTTGGATAAACACAGAGATGTTTACAATAGATGCAAAAAGAAAATGGCTTAGACCTCTGCCTGTCAGAAGAGCTGGTGAGCTAATGAAATGGAGGCACACTTTCCTTTGCAGGAGGCTGAACAGACAGAAGAGAAGCAAGGTCTAATACTATGTTATTGTATATTCTCAATGAGGATTGTAAATAAGGATGAGGATTTGAATCCCTATAATGAGGATTTGAAAGCTGAGATTTGTGCTGTATGTTTAAATAACAGAATAAAAAATATCATTACTATATAGCAAAAATGTGAGCAAGTATTAGAGTAGATGTGAATTATGCATTTTGCTTTTCAGTAGTGATTTCTTCCTTCAATAGATCACAAGTTCTGCTTTACTTGATACATTAATTTGTTGTTGTTTTGTCAAAAATGTTGCACACTATGTGAAAAAGACTGATACATTCAGGGTTACAGCAGATACAGAAGCTTATGCAAAGCTGCATGATGGCATTTGAGACCATGAAGTAAACCTGGAGTGTAGTTTTCAGTGCTAAGCACTGACACGGGACAGTGAAACAAATGTGTATTTCCTCAAGACCCAAACATATCAGTTAAGTTCACCAAGCTATATTGCCTTGTTGAATGTTGTACTGAGCTTCCTTGCATCTGGTTTATGGGCTGGATTAGGTATCTGTACGTAGTACATGCTACATTGCATCACACAGCAAATACACAGAAAATATAAGCTTTATGTTTAAAAAAGAACTGTTTAATCTTTGATAG
Seq C2 exon
GAAATCCAAAGATGACTCCTGGGTGAGCAATGGAACCTACATGGACCTTAGAAGAGAACCGGGTTTTTCCAAACTGGACAATCCTGTGCTCTGGTGAAGAGGAGCCAAGTGAAGATAATCCATGCTGTATTCCTGGATCTGATTTAAAAGAAGTATATGTGTATATATATATATTTATACACACATATAATATATGTGTGGGTGTGTGTATGTGTGCAAGTGTGCGTATCTCCAGAATTGTGCTTAATTTAGAATCTGATAATTCATTTTCTCTACTCTGTTTCAATGATTGTTTGAATGTACAAATACCCTAACTTCTTTTTATAAAATATTTAATAAATAGCACTGAATGTTAACAAGTAGAGGGAAAAGAGGAGCTTTTACACTACTTTTCCAATGTGTAATAATGTCAGTTAAGAGTTAACTTATGCCTTATCGAGTTGCATTGAAGACGGTAGCATCAGCATCTCCTAGCTGTGCTGAGAAATGAGCGTTAAGCCTTAGTGACTCTGTAAGTAGGCTTCCACAGTTCAGTGAGTAATTCAGCTGTCTATGGACTGGTCTAAATTGCTAAAACAGATTATCAGCCAGTGCTGAAATCTGTGTACAATCTTTTGCTGCTTGTGGAAAAGATTTAAATAAGCTTTTCTTTCTATTAGCTTTCTTACTAGCATTATTGGAAGGGGGAGTTCTGCAGTTACATCAGTGGATCAAGTCATAAACGTAAGCTGTACCTGGCTAAAAGTAGTGCTAGAAATTCAGGAATCGCCAAAATTTTCCACTGAGAATCTTCAGATTTATAGTCGCCAACAGGGCACGAGGAGATCTTTTGTATATAATGTTTGAGCACTGTCTGGATGAAGCAGCTCTCTCTTTTTGTGGGAAGTAATACGTATACAGAGCACAAAATCCTGTGCTTCCATAGCTTCATTTGTTTTTATTAACCTAAAAACTGCAACAGTAAGACTTTTTAAAAAGTAAGCAAACTAACTGATTGTTTTAAGCTGGAAATTTTTTCTTAGTATTTTGATATTTTCTACCTCTTAAGAAATAAACGACATATTTAAGATCTTATATTTAAAAAATGACCATCTGCCTTATGGAGAAACGTATGGAATCTTTTGATCTTCCTCTGTTTGTTTGTTGTATTCAGATAAGCATTCGAGTGTCTTGCACTAAATCAGTTGCATCGCTTTCCTGTGATTTTATACACTTGGATAGATTTGCGAAAGCATTAAGTCATTGATTAAAATATAACAGGGAAAAAATGTAGCAGAAGCCTCGCTTTGAGTCAAGATTACAGTGATGGGCAGTACCTTTTTTGTTTTGCCATGAAATCACAATGCTATGTTCACTAACAGAATAATTTGCATTCCTACCCATCCGCAGTTCAAGCCTGACTCATGACTCTTCAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.8=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTGAAATGCAAAAACAGA
R:
AGCACAATTCTGGAGATACGCA
Band lengths:
343-1797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]