BtaINT0105973 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71420910-71421778:+
Coord C1 exon
chr4:71420910-71421077
Coord A exon
chr4:71421078-71421654
Coord C2 exon
chr4:71421655-71421778
Length
577 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTGTGTCATCTGTGGAACAGCGT
3' ss Score
4.93
Exon sequences
Seq C1 exon
GTGAAGTCAGAGGACGTCTTTGATGAGTGGGTATCCAAACTCCGCCACCACAGAATGTACCGTCAGAATGAAATCGCCATGTTTCCACACGAAGTTAATCATTTTTTCCCAGGATCTACAGTCCCAGACTCCGGTCCTGGAGTCATGGACACCATTTCAAGTAGGAAG
Seq A exon
GTAATGATTTGCCAGTCATGAATCTAAAGGAAGTAGATGGCTTTGTTGGGGGGAGTCTGCTCCTGGGGGCAGTGTCTGAGGAAGGAGAGGTTAACAGGGAGGAGCAGAATGAGTTTGATCTAGGATTTTATTTGTCTGTATGTCCCCTCAGTCAGAGCCAGGGCCAGAGGAGCATCTGTTAATGCTGAGATAACTGAAGAAGAGCATGTACAGAGGAATTTAACATCCCGACTCTCCCTTGATCACTTTGACTTTAGTTTGCTTTCTGGCTATAAAATGCAGGAGATACATTTATAGTCATACAGAACCACACAATCTTTCCCAACATTTGTGTCATCTTTTCATATGGTTATCATTTGGCAGGAGGAGAATTCAGGGGCCTGTAGCACGGTGTGGCCACACGGGTGACAGCTGGAGCTCTCAGGGTCTCTGATGGAGTGCTTTGCTAGACGCTTCTTTCTCATTATGGACAGATGGCTTCCATTAGCAACTAGCCCCCTTTATTATCCTTTACCCTAAAGTGTTCCCACCAGGCTCTGTTTTCATTTATAATGTGTTTGTGTCATCTGTGGAACAG
Seq C2 exon
CGTAGCAGTATATCAAAGCAGAATTCGTTTCAAACCGGAAGCAATTTATCATTTTCTTGTGGTGGTGAGACTCGAGTTCCATTATGGTTACAGTCTTCAGAGGACATGGAAAAATGCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342:ENSBTAT00000025767:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGGACGTCTTTGATGAGT
R:
TTTGGAGCATTTTTCCATGTCCT
Band lengths:
286-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]