HsaINT0118645 @ hg19
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24904961-24905856:-
Coord C1 exon
chr7:24905689-24905856
Coord A exon
chr7:24905085-24905688
Coord C2 exon
chr7:24904961-24905084
Length
604 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTTTGTCATCCGTGGAACAGCGT
3' ss Score
4.9
Exon sequences
Seq C1 exon
GTCAAGTCAGAAGAAGTCTTTGATGAGTGGGTATCGAAACTTCGCCACCACAGAATGTATCGTCAGAATGAAATTGCCATGTTTCCACATGAAGTTAACCACTTTTTCTCAGGGTCCACCATCACAGACTCTTCATCTGGGGTGTTTGACTCCATTTCAAGTAGGAAG
Seq A exon
GTAATGAGTGTTTTGCCAATAATGAATCTGAGAACGGGGTGGCTTTGTTTCATGGAGTCCTGTCTTGGGAGCTGAGTCCGAAGAAGGAAAAGTTTTCGGGGACAAGCAGGGTAGGCTTGGGCTGGTATTTAATTAGTCTGTTTGCCCACTGAGTCAGAACCAAGACCAGACAAGCATCTATTAGTTGGGGCGGGGGCGGACAGTGACTGAAGAATAAGGAGGAATTTAGCATCTCTGAATGAACTAGCTTTATCCTGACTGGTTTGAGTTTGGTTTCCTTTTCTGGTTGTAAACTACAGTAGGTATGCATATAGCTATGCAGGATTGCAAAATATTTCCAAACATTTATATTATTATTTTGATGTTATTAATATTTGATAAAAGAAGAAAATTAGGTCCACCATTCAAGGCATGTCGTATCATAGCACGGTATGGCCAAGCCGGGGTGATAGCCAGAGGTCTTAGTACTTTGCTAGAAGCTTCTTCCTCATTATAGGCAGATGGTGTCCATTAGTGACTAGCCCACTCTGTTATCCTTTGTCTTAACATGTCCCCAATGGGCTCTGTTTCCATTTACAATGTGCTTTTGTCATCCGTGGAACAG
Seq C2 exon
CGTAGCAGTATATCAAAGCAGAATTTATTTCAAACTGGAAGCAATGTATCATTTTCTTGTGGTGGTGAGACACGAGTTCCATTATGGTTACAGTCTTCAGAGGACATGGAAAAATGCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-OSBPL3:NM_145321:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGAAGTCTTTGATGAGTGGG
R:
CTTTGGAGCATTTTTCCATGTCCT
Band lengths:
286-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)