RnoINT0105780 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80084550-80085276:-
Coord C1 exon
chr4:80085109-80085276
Coord A exon
chr4:80084674-80085108
Coord C2 exon
chr4:80084550-80084673
Length
435 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CTCTTGTCATCCATGAACAGCGC
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTAAAGTCAGAAGACGTCTTTGACGAGTGGGTGTCCAAGCTTCGTCACCACAGAATGTACCGGCAGAATGAGATCGCCATGTTTCCCCGGGATGTCAACCACTTTTTCCCAGGGTCCTCTGTCACAGACTCTGCTCCGGGAGTATTCGAGTCTGTTTCCAGTAGGAAG
Seq A exon
GTAATGATTGTGTTGCCAGCAACAAGCCTGAAAGAACAGAGAGGGACATCCCAGGAGTGAGTCTGAGGGAAGGTTTATCGGTGGAACAGGGTAGGTTGGGGTGGAGGTATCCAGTTAGTCTCTTGACCAGTAACAGATCCAGGATATAACTAGCACGGATTAAGGCAGGGAGCTGGGGTAAGGAGCCATCTGGGATCCTTGATCTGATCTGTGGCTTTCTCTTAGCCACACTGACCTTGTTTTTCCTACCTGGCTGTCGAATGCAGCTAAGCCTGTGTACAACCGCACAGGACTGTGGACTGTTTCCCAAATGTTACCGTGGCATCATCATTTCATAGAAGAAAATAAAGATGGCTGCGGAGGGCCATATAGCATGGTGTGCTTTAGCTGGGGTAGTGGCCAGATTTCTAACCTGCTCTTGTCATCCATGAACAG
Seq C2 exon
CGCAGCAGTCTATCAAAGCAGAATTCATTTCCAGCTGGAAGCAATTTGTCATTTTCTTGTGGTGGGGACACACGAGTTCCATTCTGGCTACAGTCTTCAGAGGACATGGAAAAGTGCTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGACGAGTGGGTGTCC
R:
TCGAGCACTTTTCCATGTCCT
Band lengths:
274-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]