GgaINT0097794 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31605872-31609811:-
Coord C1 exon
chr2:31609641-31609811
Coord A exon
chr2:31605999-31609640
Coord C2 exon
chr2:31605872-31605998
Length
3642 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TCTTGTTTACTCTGTAACAGGCA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTGAAATCTCAGGAGCTGTTTGATGAATGGGTAGCAAAGCTTCGTCATCACAGAATGTATCGTCAGAATGAAATCTCCATGTTTCCTCATGACGTCAATAATCTTTTCTTCCCAGTATCTACTACTGTGGACTCTGGCCCTGGTCTGTGTGATTTGACTCCAAGTAGAAAG
Seq A exon
GTAATAGTGATGATTTATAAACAATGAGCTTTTATCAGTGATTAAATTAGCCTGCTCTGTTTTGAAGTAAAGAGCGTAATGAAAATTTGTATGGGTTTAAGTTGTGGTCTAAAACATTTTGCACTATGAAGAGCAAAATAATATTATCTATAAATTTGCTCCCAAGTATTTTTCTCTGTGATGGTGGTAAATTTTTTTTAATGTCCCAGTGTTTTAAAGAAGTAAATTATATTTTCACAATGACTTTTAAAACTGGATATTAAGTTAGAATCCCCATAATTTTTGACAGTATACCATTATTTGTCTGATACATGCTGGTGAATGTTAATGTGAGTCACAGAAGAGCACTCAGCTATATCTATATATTTTTCCTCTTCTCAGATTTCCTTTAGCTAATAAAACTTCTCCCTTTATATGCTAATACATCCGACTGTGCTTAACTAGTAGATAGGAATTATTGAGCAGCTGTAACCTATGGCTACTGTTTACATTTTGTGAGGTAGCCTCACAAAAGAGTGATTTTTATTCAGCACCTGAACACAGTCTGTCTCCAGTAGTTTGCATATTGACAGGCTGACATTCACCCAAAGAAACACTTCTGCTGTAGTGTACAACCAGACCTCTTTTGAGAAAATATTTTTTTTCTTAGCAACACTGTGCTGCTCTACTTACTGTAACCATTTTCTGTTTCTGTCAACTCCACAAATATCTCTTATGCAGCAGTCACTTCTTTGTTATCCTAATGCCTAAGGTATTCTTTTTCCTGGCCGTATTGCTGTACAGTCTGAGTGGGCTCATTTCACACTCCCTGTAGTTCAAGAATTTTCTTCCTACTGGTTTGGTGGGACTCCTTCTGAGCAGTCAGCAGCACATTTATCATTATGTACTGAGGAGTCTCCATCTGTCAAATTTTAGGTGGATGTTTAGGAGTGCTTTGTCAGCTTACCCGGTATTTTTTCCTCACGTATCTTTTTTGCCTTCAAAGATGCAAAGTACAGTGCATCCTCTGCTACTAACAGGGGAAAAAAAAAAAAAAATAACAACAAGAAATCACACAAATAAACAAAATGGAGGAAATAAATGTGGAGTGTTTACACTTCCCCTTCTGACCCTGAAAGACCATTAAGGATGAGACAGCATCTCTTACTTAGCTAAGTGTGCTTCTCTGGCTTGATAAAAGTATAATAGCTGCCTAAGACTAAATCTGTGCTGCATTAGAGTGGGGGTCGGATAGCTGTACTATCATTTGGAACGATGTCATTCTGAAGTTTGGCTGTGGCTGCATGGAGCTTAGGGTCTGTCCAGAAGGTCCTGAGACAGGAGGAGGTTTGCTGCTTTGGTGGGACAATGCTGTAGCTGAATGGCAATTTTTTACCGAGCACAAACACATGCCAGAACTGCTTTTTGCTAGTGGCTGAGAGGGAGGAGATCTGTGCAAAATGGCAGCTGAAAGAGCAGACTTGCCCTGTGGTAACAGCAGTGTTCTGCAAAGAGCAGTCTGCGTGGCTTCGTGGAGCCAGCACCTCTGTGGCTCTGACAGCCATCTCTTCTGTGTCTGCGAGGCAATGGAAAACCTTTTGGGGCACTCTAGTTCCTTTCTCCCACAAGACAACTTGGATAGAAGGAGTACAATATTGAGAGCAAAAATAGAACATAGCAATTCCCATTATATCTCTATGCCTTTGCTCTCAAAAAAGTAAGAGAAAATATGAAAAAGGATCTATGTGACCAGCATATCTAAAATCTGTGCTCAATGTCAGGATATTAACCATTTCTTCTTTAGCATGAGAGACTCTAATTCACTTTTAATTTATTAATCCAGATTTGCACTGCAAAGAAGCCCTACTTATTTTCATGTGAAAAATAGAAGGGGATAGTTCTTAAGCTGCAGTTAATCACCTTAGTTCTGCTGAAGCTAAATGGAGGTTTGCCAATTTACACCAGCCCTAGGTTATTAATGTTTGTTGATATCAATCCAGCGGATAAATATTCTGGGGAAAAACATAAGTGAACTTTGCATTGTATTTTATTTGCCTTTAGAGACACCTGGTCAATTTTCACACTTTTTAAACAGTTCTTGGGGGATGAATGTATGTATCTATATTTGTGTGGAATTCTTGTATTCTAATATTTAACCATGCTGATTACAATTGAAATTATACTAACTGGAGCTTCATAAACTCTCTCTTGCCTGTTTCTTAGCAGTGCCTTGTTTCTTTGCTCTTAATTATGCCCTTTACATATGTATATTCTGGAAGATAATTGGTTATTTTGCATGTGATAAATGTGGGATTTTTTTCCCAATGTCAATACATTGCTTATCTTTAAATTCAGTGTACTTGAGCTTCTGAAGGTACTGGAATCATTTGTGTTTGCATATATAGATGACTGCAACTTATACTGTTTTATGTAGGAAGAAAACAGCTGAACTGCATAGGTTAGTTTAAAAACAATTATGCTTATTAATTTTTTCCTGCTATTACATGATATATAAATTGATATGGTACCAAATGACATCACCTGGACAGTATTTTGCAACTCAAACTGAAGTATGAATTACAAACTTTAGAAGAGTAACTATGAAAACAGCAAGAGAATGAGATATAGGTGATGTTTCATATGAATAACTTTAAACCAAGTATTACCTGAGCTTTGGTAAAAGATGGGCATGTTTTGTAAAACCTATCTTTTAGAGAAGAGCCAAACAACTTACTCAGCTCTTCTCATCATCAGTGAAGTGGCCATGAAATGGCAGTTAAGGTGAAACAACATTTTAAGAACTGATTTTAAATAAGATGTTGATAAAGTATTATTTGCTTTGTGCAGCTTCCTGATGTATATATTAATAAAAGGCAAAAGGTTTAATAAGGTTTAAAAAATAGTTACATGTTTGTATGGCTCCTCTTTGTTGCTACGTTAAAGCTGTTTTCTTCTCTATAAGCCACTGTGCACTGGTGTAGCAGTATGGGGTGGAAATTTCTTTCCATTGGAAACTACATAATTGTGCTGCTCAATTACTTCTTACTCATAGCTTCCAGCATTTCTTGTAACATCTGATAGTAAGCACTCCTGAAAGTTTGGAAAGGATTACTGAGACATTGCAAAATGATAGTCTTTACCAAAGATGTCATACATGTATTAAGGTCTATCAAGCTAAATCCATACTAAAGTCATATGACCTAGAGTAAAATTTTTAGAAAGCATGTAGTGTCATGCTTTCTGCATTGAAAAACAGCTCTAAACAAATATATGCATGTTACATTTCAGTTACCTTTGGGTTTCTTCAGGGGGCATATAAAAGAAATAGAATGTGCTGTTTTGGTTCTGTGCCACATACGGTGCTTTAAATGTATTAAATTGATTTAATTGATGCAGAGCTTTGCCTTTCTTCAGATTTCAGTTTTCAACAACATTTTGTTGTTCTTTTTGTATCTGCTTTTGTACGTTGTACCTCCAAACAGTATACCTGATGACTATAATGCATAATCTAGTTCATATACTTTATTTTTTTTCTTTTTACCACCATGCTGTTGATGCCTTCAGTCTTTGTCACTGATTGTGGATCTCAATTGTTGCTTCTCAAAATGTGTCCTTACAGCTTTATAATATTATTTGTTCATTTTCTTGTTTACTCTGTAACAG
Seq C2 exon
GCAGGAAGCTTGACCAAACAGAACTCTCTGTCAGCTGGTGGTAACTTGTCGTTTTCCTTTTCGAGTAATGAGTCCAGGATTCCATCTTGGCTACAGTCCTCTGAAGACATGGAAAAATGCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]